Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30502
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 36 0.005
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 33 0.020
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 33 0.035
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 33 0.035
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 1.3
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 1.3
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 27 1.7
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 26 3.0
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 3.0
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 3.0
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 26 4.0
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 26 4.0
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 4.0
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 5.3
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 5.3
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 25 5.3
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 25 5.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 5.3
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 5.3
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 25 7.0
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 7.0
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 25 7.0
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 9.3
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo... 25 9.3
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 25 9.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 9.3
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 35.5 bits (78), Expect = 0.005
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +1
Query: 337 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHSAQKLVHLNLANNREKN 516
N+ LDLS+NN + L+++ TL+ S N + ++ + S KL HL L N N
Sbjct: 526 NLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSN 585
Score = 25.4 bits (53), Expect = 5.3
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +1
Query: 283 TCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFL 462
+C+N Y K ++ LDL NNI E+ +++ + ++LS+N ++ + +
Sbjct: 712 SCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVNLSSNILEKIKLPV 771
Query: 463 HSAQKL 480
+++KL
Sbjct: 772 ATSKKL 777
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Frame = +1
Query: 418 LDLSTNGIQNL------NKFLHSAQKLVHLNLANN 504
LD+STN +QNL K L +L +LNL+ N
Sbjct: 905 LDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGN 939
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 33.5 bits (73), Expect = 0.020
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +1
Query: 349 LDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHSAQKLVHLNLANN 504
L ++HNN+T+L E+ +L +V LD S N I+ + L +L + L +N
Sbjct: 186 LYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDN 237
Score = 25.4 bits (53), Expect = 5.3
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 328 KHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHSAQKLVHLNLANN 504
K N+ ILD S N+I + EL LTE+ + L N I + L + +L L + N
Sbjct: 202 KLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAELGTLFQLKILGIEGN 260
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 32.7 bits (71), Expect = 0.035
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 337 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHSAQKLVHLNLANNREKN 516
++ ILD+S N I +L L + L +S N + L ++ L L + NN
Sbjct: 99 SLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIENNHIVF 158
Query: 517 SPCHI 531
P HI
Sbjct: 159 PPPHI 163
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 32.7 bits (71), Expect = 0.035
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +1
Query: 349 LDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHSAQKLVHLNL 495
LDLS N +T++ + L L ++ +L+L++N I F H + L HL +
Sbjct: 361 LDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHIS--LSHLQI 407
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 400 LTEVVTLDLSTNGIQNLNKFLHSAQKLVHLNLANNR 507
L +V+LDLS N + + L +L LNLA+N+
Sbjct: 355 LQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNK 390
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.5 bits (58), Expect = 1.3
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 277 RATCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNK 456
RA+ SN E K + + N +L ++ + + + LTE S NG+Q+L +
Sbjct: 302 RASFSNFMENEKKLYEKVNTNRTLLRNANLTLNEAQQSVKSLTERQGPRPSDNGVQDLQE 361
Query: 457 FLH--SAQKLVHLN 492
+ +A+KL H N
Sbjct: 362 KMQEVNAEKLQHEN 375
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 337 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHSAQKLVHLNLANNR 507
N+ +LDLSHN I+ + L L + L L N I+ + L LN+ + R
Sbjct: 892 NLRVLDLSHNYISDI-ESLKPLQMIHRLYLVGNRIKKMRNLCDILANLKQLNVLDLR 947
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 337 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHSAQKLVHLNLANNR 507
N+ LDLS NNI K ++ L + L N I+ + L +L +L L N+
Sbjct: 105 NLTYLDLSFNNI-KTIRNINHLKGLENLFFVQNRIRRIEN-LEGLDRLTNLELGGNK 159
Score = 25.8 bits (54), Expect = 4.0
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 325 QKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHSAQKLVHLNLANN 504
++ N+ L L N I K+ + LTE LDL N I + L + + L +L+L+ N
Sbjct: 59 ERFKNLQSLCLRQNQIKKIESVPETLTE---LDLYDNLIVRIEN-LDNVKNLTYLDLSFN 114
Query: 505 REK 513
K
Sbjct: 115 NIK 117
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 295 LAELYKFTLRQKHHNINILDLSHNN-ITKLNHELDRLTEVV 414
L+ ++K HNI+I+DL+H N I L + VV
Sbjct: 170 LSTVFKNLALASSHNIHIVDLNHRNPIDSLTTHTSMINSVV 210
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 270 AIASSMQTQLSGQTVAKLGATSSDTARKHEKTGVHVI 160
A+ +S+ ++L + L TSSD+A K T HVI
Sbjct: 445 AVVTSLASRLGVKKTDILDPTSSDSAVKQALTETHVI 481
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 367 NITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHSAQKLVHL 489
N+ K + ++ R E + LD + IQ LN+FL +QK+ ++
Sbjct: 340 NLVKSSEKVKR--ESLLLDEFESAIQYLNQFLKDSQKIQYI 378
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 235 SRKLRLHTTRDGLHRATCSNLAELYKFTLRQKHHNINILDL 357
S K +TT H+ T L ELY + Q H + LDL
Sbjct: 14 SSKKNFYTTFLTPHKLTLCLLIELYAHRIIQPQHCVPFLDL 54
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 4.0
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 289 SNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQ--NLNKFL 462
S++ + Y T +H +I NI + + L T+ L T+ ++ +LN FL
Sbjct: 81 SSVYQSYSSTFNVSNHVPSISKTV--NIRETSKHLKHSTKAPKCSLPTSALEIDHLNNFL 138
Query: 463 HSAQKLV 483
HS+ K++
Sbjct: 139 HSSAKIL 145
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 27 IKTRSNEATRKKKKKRFCYHFALHHSMCKRE*FNATDDVF 146
++ ++ + + K Y FA+HH+ +RE ++D+F
Sbjct: 801 LRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDLF 840
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 301 ELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVT 417
ELY F+++QK+ ++ ++ N+ +LN L ++ V T
Sbjct: 641 ELYSFSVKQKNQRTHVFSVT--NVDELNDWLVKINFVST 677
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 406 EVVTLDLSTNGIQNLNKFLHS 468
EVVTLD G++NL F HS
Sbjct: 252 EVVTLDEHEGGLRNLLNFGHS 272
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 5.3
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 319 LRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHSAQK--LVHLN 492
LR N++I D S N + ++ LTEV+T + I N N ++S+ K + L+
Sbjct: 197 LRINLWNLSISDHSFNIVDIKPENMEELTEVIT-SAEFHPI-NCNHLMYSSSKGNIKLLD 254
Query: 493 LANNREKNSPCHI 531
L + ++PC +
Sbjct: 255 LRQSALCDNPCKL 267
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 391 LDRLTEVVTLDLSTNGIQNLNKFLHSAQKLVHLNLANNREKNSPCHI 531
L R + LDL+ NG+ L LH A + L++ + + HI
Sbjct: 238 LQRNVVIELLDLAPNGVSFLGNVLHPAGNIATFLLSSGLGRVADNHI 284
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 38 IERSDKKEKKKTILLSFCTTSFDVQE 115
I+ D KE+ KT+L +F T FD +E
Sbjct: 305 IDGVDDKEEFKTLLAAFKTLGFDDKE 330
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 316 TLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGI 441
T+R ++H +N +L H + + RL + LD S+ G+
Sbjct: 911 TIRTRYHGMNCQNLIHYSFSYAIEFAQRLMRLSILDASSIGL 952
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 325 QKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFL 462
Q + N + DLS + L ++L R+ V +L N +NLN+++
Sbjct: 72 QSYLNDVLQDLSEDEFVSLYNKLLRIHMGVRKNLEKNFYKNLNEYV 117
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +1
Query: 298 AELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEV 411
++L+ +LRQ++ + N+L+L + T L+ +RL E+
Sbjct: 473 SDLWIKSLRQEYESKNLLELLDKHQTALSSVENRLDEI 510
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.0 bits (52), Expect = 7.0
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +1
Query: 271 LHRATCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNL 450
L + +++AEL TL H + LD+S NNI + LD L + L +
Sbjct: 273 LSSTSLADVAELPVHTL----HKLTFLDISENNIRDI-RSLDHLRTLENLKHLRITLSYF 327
Query: 451 NKFLHSAQKLV 483
NK A+ LV
Sbjct: 328 NKPTDIAKLLV 338
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -3
Query: 260 VVCKRSFRDRRLLSWEPLVVTPPGNTRKQESTSSCQHLEDVISCIE 123
++C + R++ EP + PP N+ T+S +ISC +
Sbjct: 1148 LICIIQYITLRIVRREPWYIPPPANSSDTNITNSDVTALFLISCFQ 1193
>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 185
Score = 24.6 bits (51), Expect = 9.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 496 LSLSAPIFVHYVRICSSSEYH 434
+ L P++VHY + S+ YH
Sbjct: 39 VELDTPVYVHYAKYRSARFYH 59
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 245 SFRDRRLLSWEPLVVTP 195
SFR +R+ SW+PL +TP
Sbjct: 28 SFRQQRIKSWQPL-LTP 43
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 24.6 bits (51), Expect = 9.3
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = +1
Query: 214 SQLSNRLSRKLRLHTTRDGLHRATCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHEL 393
S+ S L+ +++HT ++ LH+A + L+ R N D+ L E
Sbjct: 380 SEASIGLTDSMQVHTLQEQLHKAN-EEIEFLHDQISRMNEEGKNFEDIM-LQFRSLEEER 437
Query: 394 DRL-TEVVTLDLSTNGIQNLNKFL-HSAQKLVHLNLANNREKN 516
D L +++ TL+ N ++ + L + + L N + EKN
Sbjct: 438 DVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREIDEEKN 480
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,739
Number of Sequences: 5004
Number of extensions: 40168
Number of successful extensions: 139
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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