Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30502
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    30   0.013
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   5.9  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   7.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   7.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 349 LDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNL-NKFLHSAQKLVHLNLANN 504
           LDLS N +T +   L  L  + TLDL  N I N  N    +  +L  L L  N
Sbjct: 436 LDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGN 488


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 318 PPPKAP*H*YFRSFPQ 365
           PPP    H Y R FP+
Sbjct: 322 PPPNLDYHDYSRQFPR 337


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 532 KCDMASSFPCCLL 494
           +CD+A SF  C+L
Sbjct: 131 ECDVALSFKLCML 143


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 331 HHNINILDLSHNNITKLNHELDRLTEV 411
           H+N N  + ++NN  KL + ++ + +V
Sbjct: 91  HNNNNYNNNNYNNYKKLYYNINYIEQV 117


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 143 LLGADMMTWTPVFSC 187
           +LG  ++ W P F+C
Sbjct: 624 VLGVFLICWLPFFTC 638


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,532
Number of Sequences: 438
Number of extensions: 2736
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)