Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30501
         (501 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.      91   8e-19
U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal prot...    91   8e-19
AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p pro...    91   8e-19
AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA...    91   8e-19
X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal prot...    89   3e-18
D10228-1|BAA01080.1|  761|Drosophila melanogaster Ets domain pro...    29   2.7  
EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.    28   8.2  
EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.    28   8.2  

>U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.
          Length = 149

 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 40/67 (59%), Positives = 43/67 (64%)
 Frame = +1

Query: 49  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 228
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 229 KNKNFCP 249
           +   F P
Sbjct: 66  RQHKFRP 72



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 28/88 (31%), Positives = 38/88 (43%)
 Frame = +3

Query: 216 FPL*KEQEFLSSFNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 395
           F L ++ +F    NLDKLW+LV  +   +       K PVI++VK            P +
Sbjct: 62  FHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPAR 121

Query: 396 PVIVXXXXXXXXXXXXXXDVGGACVLSA 479
           PVIV                GG C+LSA
Sbjct: 122 PVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal protein
           RpL27a protein.
          Length = 149

 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 40/67 (59%), Positives = 43/67 (64%)
 Frame = +1

Query: 49  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 228
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 229 KNKNFCP 249
           +   F P
Sbjct: 66  RQHKFRP 72



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 28/88 (31%), Positives = 38/88 (43%)
 Frame = +3

Query: 216 FPL*KEQEFLSSFNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 395
           F L ++ +F    NLDKLW+LV  +   +       K PVI++VK            P +
Sbjct: 62  FHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPAR 121

Query: 396 PVIVXXXXXXXXXXXXXXDVGGACVLSA 479
           PVIV                GG C+LSA
Sbjct: 122 PVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p
           protein.
          Length = 149

 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 40/67 (59%), Positives = 43/67 (64%)
 Frame = +1

Query: 49  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 228
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 229 KNKNFCP 249
           +   F P
Sbjct: 66  RQHKFRP 72



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 28/88 (31%), Positives = 38/88 (43%)
 Frame = +3

Query: 216 FPL*KEQEFLSSFNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 395
           F L ++ +F    NLDKLW+LV  +   +       K PVI++VK            P +
Sbjct: 62  FHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPAR 121

Query: 396 PVIVXXXXXXXXXXXXXXDVGGACVLSA 479
           PVIV                GG C+LSA
Sbjct: 122 PVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA
           protein.
          Length = 149

 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 40/67 (59%), Positives = 43/67 (64%)
 Frame = +1

Query: 49  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 228
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 229 KNKNFCP 249
           +   F P
Sbjct: 66  RQHKFRP 72



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 28/88 (31%), Positives = 38/88 (43%)
 Frame = +3

Query: 216 FPL*KEQEFLSSFNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 395
           F L ++ +F    NLDKLW+LV  +   +       K PVI++VK            P +
Sbjct: 62  FHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPAR 121

Query: 396 PVIVXXXXXXXXXXXXXXDVGGACVLSA 479
           PVIV                GG C+LSA
Sbjct: 122 PVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal protein
           L27a protein.
          Length = 149

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 39/67 (58%), Positives = 42/67 (62%)
 Frame = +1

Query: 49  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 228
           +KKTRKLRGHVS                 N GG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNLGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 229 KNKNFCP 249
           +   F P
Sbjct: 66  RQHKFRP 72



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 28/88 (31%), Positives = 39/88 (44%)
 Frame = +3

Query: 216 FPL*KEQEFLSSFNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 395
           F L ++ +F    NLDKLW+LV  +   +       K PVI++VK            P +
Sbjct: 62  FHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPAR 121

Query: 396 PVIVXXXXXXXXXXXXXXDVGGACVLSA 479
           PVIV              + GG C+LSA
Sbjct: 122 PVIVKAKYFSKKAEDKIKEAGGVCLLSA 149


>D10228-1|BAA01080.1|  761|Drosophila melanogaster Ets domain
           protein protein.
          Length = 761

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 332 RHQYCQSWILQVARQRQTPQTTCHSKSKVLLKIS 433
           RH  C+   + +A  R+TP  TC S+ + +L+ S
Sbjct: 710 RHSQCRWKAIAMAASRRTPSDTCSSRRRSVLRQS 743


>EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 142 GGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKN 240
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


>EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 142 GGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKN 240
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,377,702
Number of Sequences: 53049
Number of extensions: 437380
Number of successful extensions: 1602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)