Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30501
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    96   1e-20
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    47   9e-06
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical...    28   3.3  
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical...    28   3.3  
AF067219-10|AAC17031.1|  753|Caenorhabditis elegans Hypothetical...    28   4.4  
AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 41/73 (56%), Positives = 49/73 (67%)
 Frame = +1

Query: 37  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 216
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 217 FHFRKNKNFCPVL 255
           FH  KN+++CP +
Sbjct: 61  FHLNKNQHYCPTV 73



 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 29/88 (32%), Positives = 40/88 (45%)
 Frame = +3

Query: 216 FPL*KEQEFLSSFNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 395
           F L K Q +  + N+++LW+LV ++ R K   A  GK PVI+  K            P+ 
Sbjct: 61  FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 117

Query: 396 PVIVXXXXXXXXXXXXXXDVGGACVLSA 479
           P+IV                GGACVL A
Sbjct: 118 PLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 29/88 (32%), Positives = 40/88 (45%)
 Frame = +3

Query: 216 FPL*KEQEFLSSFNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 395
           F L K Q +  + N+++LW+LV ++ R K   A  GK PVI+  K            P+ 
Sbjct: 4   FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 60

Query: 396 PVIVXXXXXXXXXXXXXXDVGGACVLSA 479
           P+IV                GGACVL A
Sbjct: 61  PLIVKARFFSHEAEQKIKKAGGACVLVA 88


>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 350 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 454
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 350 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 454
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 143 PALPRPPGCLRCFPIRPCP 87
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
 Frame = +1

Query: 40  ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMD-----KYHPGYFGKL 204
           +T  KK+ K  GH                   N GG   H + M+     ++ P  F KL
Sbjct: 127 STKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSEEEHEPSGFKKL 186

Query: 205 GMRNFHFRK 231
           G   F+F+K
Sbjct: 187 GKSFFNFKK 195


>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 350 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 454
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 350 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 454
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>AF067219-10|AAC17031.1|  753|Caenorhabditis elegans Hypothetical
           protein R12E2.10 protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 296 AEVCICSRWQGPRHQYCQSWILQVARQRQ 382
           AE+ ICS  +GP ++Y     +Q  RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641


>AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical
           protein T21E3.1 protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 296 AEVCICSRWQGPRHQYCQSWILQVARQRQ 382
           AE+ ICS  +GP ++Y     +Q  RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641


>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
           protein C09F9.2 protein.
          Length = 1642

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 418 NFAFTMTGCLGSLPLPSNL*YPALTILMTGTLPSGADAYFSLVCSETNVQSLSKLKLDRN 239
           N AF +T     + LP N       I MT       ++YF   C++ N+ ++     D +
Sbjct: 97  NDAFNVTETTKKVELPPNFECKDCAIRMTTQATEYGNSYFFYSCADINIVNVIP---DGD 153

Query: 238 SCSF*SGNFSYQVCQ 194
           +C   +GN    VCQ
Sbjct: 154 TC-VGNGNRMNGVCQ 167


>U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical
           protein B0304.4 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 353 SFDNIDDGDLA-IWSRCILQPRLF 285
           S  N+  G L  IWSRCI QP  F
Sbjct: 14  SSGNVQKGKLLNIWSRCIAQPSSF 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,926,020
Number of Sequences: 27780
Number of extensions: 219211
Number of successful extensions: 565
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)