Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30501
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...    90   7e-19
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...    87   5e-18
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    29   1.8  
At2g16100.1 68415.m01846 hypothetical protein                          29   2.3  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score = 90.2 bits (214), Expect = 7e-19
 Identities = 41/73 (56%), Positives = 46/73 (63%)
 Frame = +1

Query: 37  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 216
           MAT+ KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 217 FHFRKNKNFCPVL 255
           FH  +NK FCP++
Sbjct: 61  FHKLRNKFFCPIV 73



 Score = 35.1 bits (77), Expect = 0.027
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 240 FLSSFNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPK-QPVIVXXX 416
           F    NLDKLW+LV E  + K  S+ D  VP+I++ +            P+ +P +V   
Sbjct: 69  FCPIVNLDKLWSLVPEDVKAK--SSKD-NVPLIDVTQHGFFKVLGKGHLPENKPFVVKAK 125

Query: 417 XXXXXXXXXXXDVGGACVLSA 479
                      + GGA VL+A
Sbjct: 126 LISKTAEKKIKEAGGAVVLTA 146


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 40/73 (54%), Positives = 44/73 (60%)
 Frame = +1

Query: 37  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 216
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 217 FHFRKNKNFCPVL 255
           FH  +NK FCP++
Sbjct: 61  FHKLRNKFFCPIV 73



 Score = 34.7 bits (76), Expect = 0.035
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 240 FLSSFNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPK-QPVIVXXX 416
           F    NLDKLW+LV E  + K  S  D  VP+I++ +            P+ +P +V   
Sbjct: 69  FCPIVNLDKLWSLVPEDVKAK--STKD-NVPLIDVTQHGFFKVLGKGHLPENKPFVVKAK 125

Query: 417 XXXXXXXXXXXDVGGACVLSA 479
                      + GGA VL+A
Sbjct: 126 LISKTAEKKIKEAGGAVVLTA 146


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +1

Query: 37  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGM 210
           M TS+KKTR LR HVS                       H R    +  PG  G   +GM
Sbjct: 1   MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39

Query: 211 RNFHFRKNKNFCPVL 255
           R FH  +NK +C ++
Sbjct: 40  RYFHKLRNKFYCQIV 54


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 150 APSQNQHGQVPSWILWQTW 206
           +P  +Q  Q+P WILW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,261,408
Number of Sequences: 28952
Number of extensions: 202170
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)