Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30500
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    29   0.51 
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    29   0.90 
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    28   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   4.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   4.8  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    26   4.8  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   8.4  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   8.4  

>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 45  SSNYAP-APSYPAQNRNPPKYRRQSSPTAFASGPMIHNAGSVGR 173
           S+ Y P A S PA N  PP+   +++P+A  S     NAGS+ +
Sbjct: 217 SNYYNPSATSKPAVNVQPPRIPTKATPSAEPSMTASANAGSISQ 260


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 561 NEIYTPLAWIQMQQNMYPKFFQISPWTGGSIPEMA--CW*LLTNAV 692
           N   TP+ ++Q  +  YP+F ++S  TGG   + A  CW  L + +
Sbjct: 151 NAPVTPMRFLQSLRMEYPQFAEMSRETGGYAQQDAEECWSFLLSVL 196


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 77  STEQEPPEVSTSVKSNSIRFWPYDTQC 157
           +T Q+PP VST +   ++R  P D  C
Sbjct: 120 NTSQDPPYVSTPIGDIALRVMPDDNSC 146


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 48  SNYAPAPSYPAQNRN-PPKYRRQSSPTAFASGPMIHNAGSVGRMPIYAQAIPGGRLDYVQ 224
           SN A +   P Q R+ PP    +S+P+     P + ++ +V   P    AIPG     + 
Sbjct: 345 SNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404

Query: 225 NIPHNMRRMSVPV 263
            + +  R  + PV
Sbjct: 405 PLGNASRTSTPPV 417


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +2

Query: 350 GNVIQNPVNNNLWEGRRMLGNFPASGES--WPSNYNQTFASRPRSASFNQQPT 502
           GN   N ++NN W       +F  +G S  +P        SR   A+ N  P+
Sbjct: 114 GNFANNSISNNCWNSAYNSNSFEGTGSSPNFPPQNQFLSDSRSSIATLNAIPS 166


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 300 LIYPITKFHH*VQKV*VGM*YKILSIIIFGKEEECLEIFLHLGN 431
           L YP+    H + K      Y+IL+II F  + +C+ + + + N
Sbjct: 820 LHYPLDPHSHPIAKT-----YRILNIIEFTSKRKCMSVIVRMPN 858


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 696 GRPRWLIITNTPFLVLSHPSMGKFGKIWDTYSVA 595
           GR R L I +     L   S+G F K+ DTY  A
Sbjct: 271 GRGRILPIPSATSYDLIEASLGSFSKVLDTYQFA 304


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 621 KIWDTYSVAFESRPRGYKFHCPRSKSCRSTHSST 520
           +IW T ++  E+         P+   C STH+ T
Sbjct: 43  RIWSTEAINRENENENENEDLPKQLCCMSTHTGT 76


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 572 INFIAPEAKVAGPLILLRLGD 510
           I  + PEA+V GP+ L++ GD
Sbjct: 519 IGHVDPEAQVGGPIALVQDGD 539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,568,624
Number of Sequences: 5004
Number of extensions: 83628
Number of successful extensions: 265
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)