Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30500
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690... 33 0.18
12_01_0715 - 6230393-6231559,6233234-6234553 31 0.94
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 31 0.94
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59... 30 1.6
11_04_0356 - 16714394-16715005,16716651-16716656 30 2.2
02_02_0237 - 8150491-8151066 30 2.2
07_03_0340 + 16949105-16949109,16949328-16949436,16949547-169496... 29 2.9
03_03_0140 + 14771293-14771821,14772343-14772455,14772723-147728... 29 2.9
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83... 29 2.9
04_04_1683 + 35345506-35345581,35346171-35346343,35346706-353467... 29 3.8
05_07_0264 + 28779934-28781289 29 5.0
05_06_0152 - 26008495-26009074,26010555-26011361,26016536-260166... 29 5.0
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 29 5.0
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 28 6.6
03_05_1004 + 29621209-29621590,29622615-29622827,29622974-296233... 28 6.6
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572... 28 6.6
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 28 8.7
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312... 28 8.7
03_05_0122 - 21025469-21026719 28 8.7
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145... 28 8.7
>11_05_0050 +
18665251-18665613,18667280-18667744,18668548-18669037,
18669115-18669143
Length = 448
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 60 PAPSYPAQNR-NPPKYRRQSSPTAFASGPMIHNAGSVGRMPIYAQAIPGGRLDYVQNIPH 236
P P+Y + + NP + SP F S P H AGS P Q G R +V N P
Sbjct: 138 PQPAYMSHPKPNPHVFSSPCSPVVFNS-PSNHLAGSTTPTPNNLQVFNGPRNPHVSNSPS 196
Query: 237 N 239
N
Sbjct: 197 N 197
>12_01_0715 - 6230393-6231559,6233234-6234553
Length = 828
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 39 DQSSNYAPAPSYPAQNRNPPKYRRQSSPTAFASGPMIHNAGSVGRMPI 182
+ SSNY A A R+ PK R S P SGP+ H+ ++ + +
Sbjct: 215 NMSSNYGTARWCDAMARSSPKLRVISMPYCSLSGPICHSLSALRSLSV 262
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 31.1 bits (67), Expect = 0.94
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 12 RALSHSFGTDQSSNYAPAPSYPAQNRNPPKYRRQS 116
+AL+ F SS+ +P+PS P+ +R PP R+S
Sbjct: 16 QALARRFSFSSSSSPSPSPSPPSSSRKPPLPPRRS 50
>01_01_0078 +
587975-588179,588506-588606,589087-589167,589240-590178,
590388-590542,590837-590902,590963-591023,591659-591853,
591939-592049,592116-592280
Length = 692
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 75 PAQNRNPPKYRRQSSPTAFASGPMIHNAGSVGRMPIYAQAI--PGGRLDYVQNIPHNMRR 248
P+ N P Y+ S P ++ P NA + P+Y Q PGG ++Q P
Sbjct: 165 PSFQSNIPLYQPGSVPWGSSAPPSAGNASGLSVPPMYWQGYYPPGGLPPHLQQPPLLQPG 224
Query: 249 MSVP 260
+SVP
Sbjct: 225 LSVP 228
>11_04_0356 - 16714394-16715005,16716651-16716656
Length = 205
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 239 IMRNVLNIIQTTTGYCLSIYRHSTHTACIVYHRARSECC 123
I R + +++ C+S +H +HT + Y RS+ C
Sbjct: 144 ISRTPMEVLELVYYMCVSCGQHDSHTQLVAYPDVRSQSC 182
>02_02_0237 - 8150491-8151066
Length = 191
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -2
Query: 263 YW--NTHSAHIM-RNVLNIIQTTTGYCLSIYRHSTHTACIVYHRARSECC 123
YW N ++ I+ R + +++ C+S +H +HT + Y RS+ C
Sbjct: 115 YWFVNQRASRIISRTPMEVLELVYYMCVSCGQHDSHTQLVGYPDVRSQSC 164
>07_03_0340 +
16949105-16949109,16949328-16949436,16949547-16949642,
16949685-16949771,16952658-16953299
Length = 312
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -2
Query: 263 YW--NTHSAHIM-RNVLNIIQTTTGYCLSIYRHSTHTACIVYHRARSECC 123
YW N ++ I+ R ++ +++ C+S +H +HT + Y S+ C
Sbjct: 236 YWFENQRASRIISRTLMEVLELVYYMCISCGQHDSHTQLVAYLDVYSQSC 285
>03_03_0140 +
14771293-14771821,14772343-14772455,14772723-14772830,
14772931-14772973,14773454-14773593,14774216-14774446
Length = 387
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 63 APSYPAQNRNPPKYRRQSSPTAFASGPMIHNAGSVG-RMPIYAQAIPGGRLDYVQN 227
+P P PP+ SSP FA +I + GS G R ++A PGGR D ++
Sbjct: 41 SPPQPQPQLQPPRPSPSSSPPRFA---VIIDGGSTGSRAHVFATG-PGGRPDLARS 92
>03_01_0104 -
830884-831282,831511-832205,832368-833387,833570-833696,
834342-834709,834780-835059,835137-835466
Length = 1072
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 719 GRREGKFWEDRVG**LPTRHFWY*ATRPWG 630
GR+E +ED V +P+RH W TRP+G
Sbjct: 323 GRKEMSLYEDLVAAWVPSRHEWL-RTRPFG 351
>04_04_1683 +
35345506-35345581,35346171-35346343,35346706-35346739,
35346919-35347055,35347356-35347422,35347645-35347744,
35348375-35348538,35349023-35349069,35349177-35349224,
35349463-35349976,35350190-35350278,35350472-35350549,
35350972-35351019
Length = 524
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 3 NYTRALSHSFGTDQ---SSNYAPAPSYPAQNRNPPKY 104
N+ +S GT Q SSN+ P PS+P PP +
Sbjct: 348 NHANVNGNSQGTPQTETSSNHTPPPSFPTNTAVPPPF 384
>05_07_0264 + 28779934-28781289
Length = 451
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +2
Query: 242 AQNECSSNYASGTFVQNQLTDLSYNQISSLSPKGLGGNVIQNPVNNNLWEGRRMLGNFPA 421
A CS+ A G + + + + +L +G P L+EG R +GN P
Sbjct: 314 AWEACSA--AVGAAQEEDVMKSAKRDVEALLHRGASPTATPTPTRVLLYEGIRDVGNGPV 371
Query: 422 SGESW 436
E+W
Sbjct: 372 CAEAW 376
>05_06_0152 -
26008495-26009074,26010555-26011361,26016536-26016657,
26016860-26017462
Length = 703
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Frame = -2
Query: 155 IVYHRAR----SECCW-T*LTSILRGVPVLCW 75
++YHRA + C W + L I GVP+LCW
Sbjct: 401 VLYHRATGAFVTHCGWNSVLEGITAGVPMLCW 432
>02_04_0640 -
24664841-24664855,24664895-24664978,24665232-24665319,
24665457-24667318
Length = 682
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 132 ASGPMIHNAGSVGRMPIYAQAIPGGRLDYVQNIPHNMRRMSVPVIMLLGHSFKTNL 299
A G +I + G R+ + A + RL +++ + H+ R+ ++ + LLG TN+
Sbjct: 200 AMGFVIQHLGPSDRLSVIAFSSTARRLFHLRRMSHSGRQQALQAVNLLGAGGGTNI 255
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -2
Query: 569 NFIAPEAKVAGPLILLRLGDFFVWVVG*NLQNAV*RQMFDYNLMAKIPQMQENFQAFFFL 390
NF + + VA PL L+++ D + G +++ V YN K+ E F AF FL
Sbjct: 394 NFYSSDIIVASPLALIKVKDKLLLQEGRDVRWGV-----HYNCRQKVTPATEGFGAFMFL 448
>03_05_1004 +
29621209-29621590,29622615-29622827,29622974-29623337,
29623751-29624573
Length = 593
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +3
Query: 15 ALSHSFGTDQSSNYAPAPSYPAQNRNPPKYRRQSSPTA--FASGPMIHNAGSVGRMPIYA 188
++S + S+ + +P + +P K R+ SP FA+ N G MP++
Sbjct: 438 SISAPMASSDLSSASTSPIHEKLMLSPLKLSREYSPIGLGFAANRDEVNQGEANWMPMFR 497
Query: 189 QAIPGGRLDYVQNIPHNM 242
++ GG L V +NM
Sbjct: 498 DSLMGGPLGEVLTKNNNM 515
>03_02_0120 -
5728572-5728712,5728812-5728916,5729178-5729441,
5729809-5729958,5730070-5730150,5730481-5730597,
5730679-5730831,5731426-5731569,5731773-5731802,
5732070-5732430,5732682-5732849,5733371-5733600,
5734088-5734194,5734275-5734623
Length = 799
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 42 QSSNY-APAPSYPAQNRNPPKYRRQSSPTAFASGPMIHNAGSVGRMPIYAQ 191
Q++ Y A P+YPAQ Y + S+ A P + A + + P+ AQ
Sbjct: 739 QAAAYGAYPPTYPAQAYTQQTYAQPSAMAVAAPAPAVAPAAAYPQQPVAAQ 789
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 236 MRNVLNIIQTTTGYCLSIYRHSTHTACIVYHRA 138
M + + TTT CL ++ H+ + CI ++ A
Sbjct: 1261 MDKTVRLWDTTTKACLKVFAHNDYVTCIQFNPA 1293
>03_05_0388 +
23726957-23727418,23730016-23730262,23731072-23731220,
23731313-23731597,23731665-23731889,23734251-23734445
Length = 520
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +3
Query: 33 GTDQSSNYAPAPSYP-AQNRNPPKYRRQSSPTAFASGPMIHNAGSVG 170
G ++ PAP+ + PP Y A +GP HN GS G
Sbjct: 465 GPPPPASNPPAPAVDLSYGSYPPPYGASYGSAASGAGPAPHNGGSYG 511
>03_05_0122 - 21025469-21026719
Length = 416
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 16 H*AIVLAPTNHLIMHPHRP--TQHRTGTPRSIDVSQVQQHSLLA 141
H + L P L +HPH P +HR + R I VS LLA
Sbjct: 7 HLSPTLKPPPPLSLHPHLPLLRRHRHPSSRPISVSAAAPSDLLA 50
>02_01_0223 +
1453478-1453750,1455788-1456018,1456066-1456200,
1457918-1457971,1458417-1458482,1458593-1458679,
1459338-1459394,1459470-1459500,1459577-1459634,
1459710-1459761,1459881-1459917,1460008-1460210,
1460556-1460633,1460683-1460853,1461126-1461239
Length = 548
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +1
Query: 490 PTTHTKKSPSRRRMSGPATFASGAMKFIPPWPGFKCNRICIPNFSKFP 633
P T +K + + PAT + P WPGF+ IP FP
Sbjct: 219 PGTPSKATKASEPEQSPATTSGTTAPVYPEWPGFQAYS-AIPPHGFFP 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,666,959
Number of Sequences: 37544
Number of extensions: 553984
Number of successful extensions: 1890
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1890
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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