Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30500
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               32   0.41 
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)        29   2.9  
SB_40567| Best HMM Match : Beta-lactamase (HMM E-Value=9.7e-28)        29   5.1  
SB_6077| Best HMM Match : EGF (HMM E-Value=0)                          29   5.1  
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                24   5.7  
SB_48589| Best HMM Match : EGF (HMM E-Value=2e-19)                     28   8.9  
SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 305 LSYNQISSLSPKGLGGNVIQNPVNNNLWE--GRRMLGNFPASGESWPSNYNQTFASRPRS 478
           L+ ++   L+ +  G   I N  NNN  E  G + +G  P +   WP +YN T  +RPRS
Sbjct: 314 LTISEAGLLNLQQKGNKRIANHHNNNNMESVGIQSIGVEPVTLRKWPPHYNGT--ARPRS 371

Query: 479 AS 484
            S
Sbjct: 372 FS 373


>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 42  QSSNYAPAPSYPAQNRNPPKYRRQSSPTAFASGPMIHNAGSVGRMPIYAQ-AIPGGRLDY 218
           + SN  P  +    N NPP   R+S+P    +GP +H   S     ++ Q + P  +   
Sbjct: 328 RKSNPNPPHNSRKSNPNPPLNGRKSNPNPPHNGPKVHPQPSPQWPKVHPQPSPPPEKFGP 387

Query: 219 VQNIPHNMRRMSVPVIMLLGH 281
           +  I H   +  +  ++ + H
Sbjct: 388 LFRISHTQEKSGLLFLLKIAH 408


>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
          Length = 1188

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 658 SGIEPPVHGEIWKNLGYIFCC 596
           SG E P + E+WK + Y+F C
Sbjct: 887 SGAEVPWYEELWKTIKYVFTC 907


>SB_40567| Best HMM Match : Beta-lactamase (HMM E-Value=9.7e-28)
          Length = 1006

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 24  HSFGTDQSSNYA----PAPSYPAQNRNPPKYRRQSSPTAFASGPMI 149
           H    D  S+Y     P  S+P++N +   Y   + PT F   P I
Sbjct: 464 HLTDNDTKSSYPSRNDPRDSFPSRNHSMDPYHHTNEPTVFRGSPQI 509


>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1165

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 140 PYDTQCRQCGSNADICSSNTRWSFGLCSKHSS*YAQNECSSNY 268
           P + Q R C  N+ +C +    + G C  ++S Y   EC   Y
Sbjct: 507 PDNRQERTCAGNSSVCDTYLCRNGGSCFSNNSTYYTCECPKGY 549


>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 797

 Score = 24.2 bits (50), Expect(2) = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 155 CRQCGSNADICSSNT 199
           C +CG  +DIC S+T
Sbjct: 142 CNKCGHISDICMSST 156



 Score = 22.6 bits (46), Expect(2) = 5.7
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 71  LPSTEQEPPEVSTSVKSNSIRFWPYDTQCRQCGSN 175
           +P T  + PE +   +S+  +      +C  CG N
Sbjct: 91  IPETGAQTPESARPHQSHVFKIEQTPQKCMSCGKN 125


>SB_48589| Best HMM Match : EGF (HMM E-Value=2e-19)
          Length = 112

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 161 QCGSNADICSSNTRWSFGLCSKHSS*YAQNECSSNYA 271
           +C S  D C S+   + G C+ H + Y   EC + YA
Sbjct: 33  ECESEIDECESSPCLNGGTCTNHVN-YFHCECRAGYA 68


>SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 375 IIIFGKEEECLEIFLHLGNLGHQIIIKHLPLDRVLQV 485
           ++   +E ECL+   H+ +L  +  +K LPL+R+ Q+
Sbjct: 487 VLALKQEIECLQSDSHIQSLNKKSELKDLPLERLKQL 523


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,716,523
Number of Sequences: 59808
Number of extensions: 627674
Number of successful extensions: 1886
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1884
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)