Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30500
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily ass...    32   0.37 
U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily ass...    32   0.37 
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr...    26   0.80 
U58760-8|AAY55858.2|  216|Caenorhabditis elegans Hypothetical pr...    31   0.84 
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF045635-1|AAU87830.1|  480|Caenorhabditis elegans Nuclear hormo...    30   1.9  
Z69791-3|CAA93662.1|  924|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z69791-2|CAA93661.2|  919|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z69791-1|CAA93660.1|  945|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U61949-6|AAB03154.1|  166|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41995-10|AAA83466.1|  266|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    28   5.9  
AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.     28   7.9  
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     28   7.9  
AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical ...    28   7.9  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform a protein.
          Length = 395

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/41 (46%), Positives = 21/41 (51%)
 Frame = +2

Query: 587 DSNATEYVSQIFPNFPMDGWLNTRNGVLVIINQRGLPKIYL 709
           D N T  V Q  P +P  GW  T N  LVII Q  +P I L
Sbjct: 190 DDNNTSIVQQCLPVYPDAGWWKTYNVYLVII-QYFVPMIIL 229


>U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform b protein.
          Length = 386

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/41 (46%), Positives = 21/41 (51%)
 Frame = +2

Query: 587 DSNATEYVSQIFPNFPMDGWLNTRNGVLVIINQRGLPKIYL 709
           D N T  V Q  P +P  GW  T N  LVII Q  +P I L
Sbjct: 190 DDNNTSIVQQCLPVYPDAGWWKTYNVYLVII-QYFVPMIIL 229


>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
           protein ZC504.4d protein.
          Length = 1072

 Score = 26.2 bits (55), Expect(2) = 0.80
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 461 ASRPRSASFNQQPTQRNHPVVEE*VD 538
           ASRPR  S +Q+  Q++HP      D
Sbjct: 410 ASRPRPVSHHQRSPQQSHPAAPHLAD 435



 Score = 23.4 bits (48), Expect(2) = 0.80
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 368 PVNNNLWEGRRMLGNFPASGESWPSNYNQTFASRPRSAS 484
           P++N L  G + L   P      P  Y Q+    PR  S
Sbjct: 350 PMDNTLQPGAQQLRRLPQQPAPAPFQYQQSRYVEPRRES 388


>U58760-8|AAY55858.2|  216|Caenorhabditis elegans Hypothetical
           protein C27A2.7 protein.
          Length = 216

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 77  STEQEPPEVSTSVKSNSIRFWPYDTQCRQCGSN-ADICSSNTRWSFGLCSKHSS*YAQNE 253
           +  Q+  +V T  + +S+RF  YD      G+   D C+S+ R  F LC   +  ++ N 
Sbjct: 53  NNNQQSEKVYTKAQRSSVRFPTYDGLLPAGGTYICDECNSDERTPFQLCEHKAIYHSYNF 112

Query: 254 C 256
           C
Sbjct: 113 C 113


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = +3

Query: 60  PAPSYPAQNRNPPKYRRQSSPTAFASGPMIHNAGSVGRMPIYAQAIPGGR 209
           P P  P QNR PP    Q +P+   SG     AGS G+ P Y    P  R
Sbjct: 817 PVPPGPPQNRMPPPPPAQGAPS--PSGA----AGSNGKQPRYGTPAPPSR 860


>AF045635-1|AAU87830.1|  480|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 76 protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 24  HSFGTDQSSNYAPA--PSYPAQNRNPPKYRRQSSPTAFASGPMIHNAGS 164
           + F T  SS   P+  PS+P  + NP  Y + S P+A +S P   +  S
Sbjct: 24  YPFETPSSSTTTPSVPPSFP-HSSNPNAYMKPSPPSAISSPPSTSSCSS 71


>Z69791-3|CAA93662.1|  924|Caenorhabditis elegans Hypothetical
           protein F39D8.1c protein.
          Length = 924

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 27  SFGTDQSSNYAPAPSYPAQNRN 92
           +FGT QS NY P P    QN+N
Sbjct: 647 NFGTTQSPNYVPVPVPIPQNQN 668


>Z69791-2|CAA93661.2|  919|Caenorhabditis elegans Hypothetical
           protein F39D8.1b protein.
          Length = 919

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 27  SFGTDQSSNYAPAPSYPAQNRN 92
           +FGT QS NY P P    QN+N
Sbjct: 642 NFGTTQSPNYVPVPVPIPQNQN 663


>Z69791-1|CAA93660.1|  945|Caenorhabditis elegans Hypothetical
           protein F39D8.1a protein.
          Length = 945

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 27  SFGTDQSSNYAPAPSYPAQNRN 92
           +FGT QS NY P P    QN+N
Sbjct: 665 NFGTTQSPNYVPVPVPIPQNQN 686


>U61949-6|AAB03154.1|  166|Caenorhabditis elegans Hypothetical
           protein F49E8.6 protein.
          Length = 166

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 36  TDQSSNYAPAPSYPAQNRNPPKYRRQSSP-TAFASGPMI 149
           TD+ S    APSYP Q+  PP  +    P   +  GP++
Sbjct: 9   TDKKSGMNEAPSYPKQSAVPPPPQVAHYPMPTYPQGPLV 47


>U41995-10|AAA83466.1|  266|Caenorhabditis elegans Hypothetical
           protein E02C12.9 protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = -2

Query: 422 MQENFQAFF--FLPKDYY*QDFVLHSHLNLLDLVMKFGYRINQ*VGFERMSQKHNYWNTH 249
           +Q++FQ  +  F  + YY  D ++ + +    L+ K+  +I++ +GF+ +    + W ++
Sbjct: 71  LQKHFQGMYSVFEKEKYYQVDGLIETFVVYQKLLKKYT-KISELLGFKSVLNHGDLWQSN 129

Query: 248 SAHIMRN 228
             H M N
Sbjct: 130 MIHSMEN 136


>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
           protein C45G3.1 protein.
          Length = 1186

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +2

Query: 284 VQNQLTDLSYNQISSLSP--KGLGGNVIQNPVNNNLWEGRRMLGNFPASGESWPSNYNQ- 454
           VQ  L D S  +  S+SP    +   V + P NN L E R  L   P+S +S  S +N  
Sbjct: 584 VQQLLADSSIPRNRSVSPFSNNVTFTVPRTPRNNILTE-RPSLSQIPSSRQSMDSTFNDA 642

Query: 455 TF-ASRPRSASFNQ 493
           TF  SR    S N+
Sbjct: 643 TFTVSRDSIESMNK 656


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 42  QSSNYAPAPSYPAQNRNPP 98
           Q  N+   PS PAQNR+PP
Sbjct: 284 QYGNFYSQPSQPAQNRSPP 302


>AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +2

Query: 65  TVLPSTEQEPPEVSTSVKSNSI--RFWPYDTQCRQCGSNADICSSNTRWSFGLCSKHSS* 238
           +VLPST  EPP  +++    SI  +  P  ++ RQC    D+C     + F         
Sbjct: 64  SVLPSTSSEPPPPASAPPRISIYHKMVPSKSKFRQC----DVCEHIFIFDFVRKQHLDDV 119

Query: 239 YAQNECSSNYASG 277
           YA N C      G
Sbjct: 120 YACNVCGIRVHKG 132


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +2

Query: 65  TVLPSTEQEPPEVSTSVKSNSI--RFWPYDTQCRQCGSNADICSSNTRWSFGLCSKHSS* 238
           +VLPST  EPP  +++    SI  +  P  ++ RQC    D+C     + F         
Sbjct: 68  SVLPSTSSEPPPPASAPPRISIYHKMVPSKSKFRQC----DVCEHIFIFDFVRKQHLDDV 123

Query: 239 YAQNECSSNYASG 277
           YA N C      G
Sbjct: 124 YACNVCGIRVHKG 136


>AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical
           protein F58D5.4b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +2

Query: 65  TVLPSTEQEPPEVSTSVKSNSI--RFWPYDTQCRQCGSNADICSSNTRWSFGLCSKHSS* 238
           +VLPST  EPP  +++    SI  +  P  ++ RQC    D+C     + F         
Sbjct: 64  SVLPSTSSEPPPPASAPPRISIYHKMVPSKSKFRQC----DVCEHIFIFDFVRKQHLDDV 119

Query: 239 YAQNECSSNYASG 277
           YA N C      G
Sbjct: 120 YACNVCGIRVHKG 132


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +2

Query: 65  TVLPSTEQEPPEVSTSVKSNSI--RFWPYDTQCRQCGSNADICSSNTRWSFGLCSKHSS* 238
           +VLPST  EPP  +++    SI  +  P  ++ RQC    D+C     + F         
Sbjct: 68  SVLPSTSSEPPPPASAPPRISIYHKMVPSKSKFRQC----DVCEHIFIFDFVRKQHLDDV 123

Query: 239 YAQNECSSNYASG 277
           YA N C      G
Sbjct: 124 YACNVCGIRVHKG 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,853,568
Number of Sequences: 27780
Number of extensions: 477473
Number of successful extensions: 1483
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)