Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30500
(729 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30720.1 68415.m03747 thioesterase family protein similar to ... 31 1.0
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB... 30 1.8
At2g47790.1 68415.m05965 transducin family protein / WD-40 repea... 29 4.2
At2g20950.4 68415.m02474 expressed protein 29 4.2
At2g20950.3 68415.m02473 expressed protein 29 4.2
At2g20950.2 68415.m02472 expressed protein 29 4.2
At2g20950.1 68415.m02471 expressed protein 29 4.2
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 4.2
At5g38740.1 68418.m04685 MADS-box family protein contains simila... 28 5.5
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,... 28 5.5
At1g03800.1 68414.m00361 ERF domain protein 10 (ERF10) identical... 28 5.5
At5g58450.1 68418.m07320 expressed protein predicted proteins fr... 28 7.3
At5g51590.1 68418.m06396 DNA-binding protein-related contains Pf... 28 7.3
At3g25010.1 68416.m03126 disease resistance family protein conta... 28 7.3
At1g55500.1 68414.m06349 expressed protein contains Pfam profile... 28 7.3
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 27 9.6
At5g07620.1 68418.m00873 protein kinase family protein contains ... 27 9.6
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote... 27 9.6
At4g12610.1 68417.m01987 transcription initiation factor IIF alp... 27 9.6
At3g53190.1 68416.m05861 pectate lyase family protein similar to... 27 9.6
At3g25020.1 68416.m03127 disease resistance family protein conta... 27 9.6
At3g17460.1 68416.m02229 PHD finger family protein contains Pfam... 27 9.6
>At2g30720.1 68415.m03747 thioesterase family protein similar to
SP|Q9R0X4 48 kDa acyl-CoA thioester hydrolase,
mitochondrial precursor (EC 3.1.2.-) {Mus musculus};
contains Pfam profile PF03061: thioesterase family
protein
Length = 455
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 323 SSLSPKGLGGNVIQNPVNNNLWEGRRMLGNFPASGESWPSNYNQTFASRPRSA 481
S P L + +PV N LWE RR + P ++ S SR R++
Sbjct: 55 SMRKPISLWPGMYHSPVTNALWEARRNMFEIPTGDDASQSKLTAKSPSRSRTS 107
>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
identical to abscisic acid-insensitive protein 3
GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
Cell 4 (10), 1251-1261 (1992))
Length = 720
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 27 SFGTDQSSNYAPAPSYPAQNRNPPKYRRQSS-PTAFASGPMIH 152
+F +D Y PAP+YP Q P S P SGPM H
Sbjct: 362 AFVSDPGFGYMPAPNYPPQPEFLPLLESPPSWPPPPQSGPMPH 404
>At2g47790.1 68415.m05965 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; The first 3 exons are
identical to that of GB:AJ224957. This gene appears to
be a truncated version of that in GB:AJ224957; contains
4 WD-40 repeats (PF00400)
Length = 392
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 240 YYEECFEHNPNDHRVLLEHISAFDPHCLH-CVS*GQKR 130
YY EC H+ +++ SA PH LH C S G R
Sbjct: 75 YYGECKGHSDTVNQIAFSSDSAASPHVLHSCSSDGTIR 112
>At2g20950.4 68415.m02474 expressed protein
Length = 530
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 3 NYTRALSHSFGTDQSSNYAPAPSYPAQNRNPPKYRR 110
+Y+R + G S N +P +P+Q+R+PP + R
Sbjct: 149 DYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHAR 184
>At2g20950.3 68415.m02473 expressed protein
Length = 505
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 3 NYTRALSHSFGTDQSSNYAPAPSYPAQNRNPPKYRR 110
+Y+R + G S N +P +P+Q+R+PP + R
Sbjct: 149 DYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHAR 184
>At2g20950.2 68415.m02472 expressed protein
Length = 503
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 3 NYTRALSHSFGTDQSSNYAPAPSYPAQNRNPPKYRR 110
+Y+R + G S N +P +P+Q+R+PP + R
Sbjct: 149 DYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHAR 184
>At2g20950.1 68415.m02471 expressed protein
Length = 520
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 3 NYTRALSHSFGTDQSSNYAPAPSYPAQNRNPPKYRR 110
+Y+R + G S N +P +P+Q+R+PP + R
Sbjct: 166 DYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHAR 201
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 726 LIW-PPRR*ILGRPRWLIITNTPFLVLSHPSMGKFGKIWDTYSV 598
L+W PP G W ++ P L +S PS GK W T +
Sbjct: 299 LVWSPPSSDNGGGDPWNSVSGQPTLQISPPSGSGSGKFWSTQRI 342
>At5g38740.1 68418.m04685 MADS-box family protein contains
similarity to hypothetical proteins of [Arabidopsis
thaliana]
Length = 426
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 239 YAQNECSSNYASGTFVQNQLTDLSYNQISSLS 334
Y N C SN+ TF Q L+ ++NQ S+S
Sbjct: 306 YEHNMCMSNHGDATFSQIPLSASNFNQDFSVS 337
>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
amidohydrolase) {Canavalia ensiformis}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 838
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 666 TPFLVLSHPSMGKFGKIWDTYSVAFESR 583
TP V+S P G FGK SVAF S+
Sbjct: 738 TPEPVISRPMFGAFGKAGSENSVAFVSK 765
>At1g03800.1 68414.m00361 ERF domain protein 10 (ERF10) identical to
ERF domain protein 10 GI:11414990 from [Arabidopsis
thaliana]
Length = 245
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 269 ASGTFVQNQLTDLSYNQISSLSPKGLGGNVIQNPVNNNLWEGRR 400
+S T V N L++ + ++L G GN + +PVNN L E R
Sbjct: 117 SSATPVNNNLSETVSDGNANLPLVGDDGNALASPVNNTLSETAR 160
>At5g58450.1 68418.m07320 expressed protein predicted proteins from
D.melanogaster, C.elegans and S.pombe
Length = 1065
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 20 EP*FWHRPII*LCTRTVLPSTEQEPPEVSTSVKSNS 127
EP WH II CTR+ LPS +++ + S+S
Sbjct: 907 EPLAWHSLIIQACTRSSLPSGKKKKKNQHSDQLSSS 942
>At5g51590.1 68418.m06396 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 419
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 27 SFGTDQSSNYAPAPSYPAQNRNPPKYRRQSSPTAFAS 137
SFG Q P P YP ++ NP + S T+ A+
Sbjct: 15 SFGLKQHETPLPPPGYPPRSENPNLFPVGQSSTSSAA 51
>At3g25010.1 68416.m03126 disease resistance family protein contains
leucine rich-repeat (LRR) domains (23 copies)
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 881
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Frame = +2
Query: 284 VQNQLTDLSYNQISSLSPKGLGG-------NVIQNPVNNNLWEGRRMLGNFPASGE 430
V+ + DLS NQ+S P GLG NV N +N + +G ++ G +S E
Sbjct: 749 VKIESLDLSSNQLSGTIPNGLGTLSFLAYVNVSHNQLNGEIPQGTQITGQPKSSFE 804
>At1g55500.1 68414.m06349 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 549
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 299 TDLSYNQISSLSPKGLGGNVIQNPVNNNLWEGRRMLGNFPASGESWP 439
T+ + N S+ PKG+ G+ P+N + G LG A+G P
Sbjct: 117 TNKAANSASAGIPKGMNGSAPVKPLNQSALYGNSALGGGLAAGYQDP 163
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Frame = +2
Query: 227 HSS*YAQNECSSNYASGTFVQNQLTDLSYNQISSLSPKGLGGNVIQNPVNN-NLWEGRRM 403
+ S Y + S + G+ + + S G+G + Q+ NLW
Sbjct: 500 NGSPYTSSAFSEMVSDGSKANEGFMIHNVRGVEGFSGGGIGSPMHQSSRRPINLWSNSNT 559
Query: 404 LGNFPASGESW---PSNYNQTFASRPRSASFNQQP 499
P+SG W PS+ N RP F++ P
Sbjct: 560 QQQNPSSGMMWPNSPSHINSIPTQRPPVTVFSRAP 594
>At5g07620.1 68418.m00873 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 359
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 626 LEKFGIHILLHLNPGQGGINFIAPEAKVAGPLILLR 519
+ FG+H+LL+L+ GQ ++ A E A LI ++
Sbjct: 220 ISDFGLHLLLNLSAGQEILDVSAAEGYKAPELIKMK 255
>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
kinase, putative protein kinase TMKL1, Arabidopsis
thaliana, PID:E353150
Length = 757
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 242 AQNECSSNYASGTFVQNQLTDLSYNQISSLSPKGLGGNVIQNPVNNNLWEGRRMLGNF-P 418
++N S + SG F Q+ DLS N ++ PK LGG + NL ++LG P
Sbjct: 183 SKNTFSGDIPSG-FEAAQILDLSSNLLNGSLPKDLGGKSLH---YLNL-SHNKVLGEISP 237
Query: 419 ASGESWPSN 445
E +P+N
Sbjct: 238 NFAEKFPAN 246
>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
subunit (TFIIF-alpha) family protein low similarity to
SP|Q05913 Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha) (Transcription factor 5, large
chain) (TF5A) {Drosophila melanogaster}; contains Pfam
profile PF05793: Transcription initiation factor IIF,
alpha subunit (TFIIF-alpha)
Length = 543
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 146 DTQCRQCGSNADICSSNTRWSFGLCSKHSS*YAQNECSSNYASGTFV 286
+T C CGS +D+ S+ R LC K AQN+ S + GT V
Sbjct: 8 NTSCVGCGSQSDLYGSSCR-HMTLCLKCGRTMAQNK-SKCHECGTVV 52
>At3g53190.1 68416.m05861 pectate lyase family protein similar to
pectate lyase 2 GP:6606534 from [Musa acuminata]
Length = 483
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 413 FPASGESWPSNYNQTFASRPRSASFNQQPT 502
F ASGE Y + ++ P+SASF Q T
Sbjct: 379 FVASGEGAEMRYEKAYSVEPKSASFITQIT 408
>At3g25020.1 68416.m03127 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 890
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Frame = +2
Query: 302 DLSYNQISSLSPKGLGG-------NVIQNPVNNNLWEGRRMLGNFPASGE 430
DLS NQ+S P GLG NV N +N + +G ++ G +S E
Sbjct: 754 DLSSNQLSGTIPNGLGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFE 803
>At3g17460.1 68416.m02229 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 198
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 550 ASGAMKFIPPWPGFKCNRICIPNFSKFPHGRV 645
AS + PP F C PNF+ FP RV
Sbjct: 87 ASSSSSAPPPASSFTCQPCSNPNFTFFPKSRV 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,820,711
Number of Sequences: 28952
Number of extensions: 444524
Number of successful extensions: 1590
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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