Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30499
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1173 + 11092482-11093465,11093552-11093914                       31   0.92 
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104...    29   4.9  
07_01_1162 - 11002193-11002274,11002628-11002662,11004285-110044...    28   6.5  
04_01_0192 - 2245794-2246186,2246699-2247490                           28   6.5  
07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997     28   8.6  
05_01_0379 + 2975701-2976831                                           28   8.6  

>07_01_1173 + 11092482-11093465,11093552-11093914
          Length = 448

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 663 INLVIPDDHPKVDFVLCLPCRDTLFLSRRSF 571
           + +V P   P VDF+ C PC + L+++   F
Sbjct: 302 LEMVDPQVKPVVDFLRCFPCLEALYITSHMF 332


>08_01_0130 +
           1040696-1041049,1042135-1042275,1042422-1042673,
           1043797-1043904,1044289-1044593,1044720-1044841,
           1044979-1045225,1045308-1045365,1045414-1045530,
           1045718-1045753,1046492-1046554,1046958-1047047,
           1047241-1047399,1047475-1047596,1048145-1048217,
           1048307-1048375
          Length = 771

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 678 LPRTLINLVIPDDHPKVDFVLCLPCRDTLFLSRR 577
           +PRT +   I D+   +D VL   C D  F+ RR
Sbjct: 158 IPRTHMQAEILDEIVDIDLVLNFKCADNCFMKRR 191


>07_01_1162 -
           11002193-11002274,11002628-11002662,11004285-11004419,
           11004521-11005048
          Length = 259

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 630 VDFVLCLPCRDTLFLSRR 577
           VDF+ C+PC +TL+++ R
Sbjct: 206 VDFLKCVPCLETLYITSR 223


>04_01_0192 - 2245794-2246186,2246699-2247490
          Length = 394

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 708 CQVTLTVTVYLPRTLINLVIPD---DHPKVDFVLCLP 607
           CQVT +  +++P  L  L IPD    H  +DF+  LP
Sbjct: 193 CQVTKSENIHIPSLLNPLEIPDMAWTHISMDFIEGLP 229


>07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997
          Length = 471

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = -3

Query: 702 VTLTVTVYLPRTLINLVIPDDHPK----VDFVLCLPCRDTLFLSRRSF 571
           V+LT ++   R++  LV+  D P     VDF+ C PC + L+++ + F
Sbjct: 313 VSLTTSM---RSVKVLVLDSDGPNLDAVVDFLSCFPCLERLYIASQPF 357


>05_01_0379 + 2975701-2976831
          Length = 376

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 633 KVDFVLCLPCRDTLFLSRRSFNC 565
           +V  V+C PCRDTL  + R + C
Sbjct: 140 EVGHVVCAPCRDTLAPAGRCYVC 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,665,231
Number of Sequences: 37544
Number of extensions: 296616
Number of successful extensions: 501
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)