Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30499
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    26   0.41 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.9  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 98  RHYFYFVPAQLSKAKGIG-KNILLKLQLVI 184
           RHY+ FVP        +G K  +LKL++V+
Sbjct: 473 RHYYAFVPFSAGPRSCVGRKYAMLKLKIVL 502


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 168 LRRIFLPIPFAFDNCA 121
           + RIF PI FAF N A
Sbjct: 418 ISRIFFPIVFAFFNLA 433


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 168 LRRIFLPIPFAFDNCA 121
           + RIF PI FAF N A
Sbjct: 418 ISRIFFPIVFAFFNLA 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,637
Number of Sequences: 438
Number of extensions: 3788
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)