Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30498
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 182 4e-47
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 177 1e-45
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 78 1e-15
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 62 1e-10
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 34 0.023
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.21
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.28
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.28
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.1
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 28 1.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.1
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.6
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 6.1
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 26 6.1
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 8.0
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 8.0
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 182 bits (443), Expect = 4e-47
Identities = 79/109 (72%), Positives = 91/109 (83%)
Frame = +2
Query: 245 EGLHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 424
+ HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++R
Sbjct: 284 KAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRR 343
Query: 425 TIQFVDWCPTGFKVGINYQPPTVVPGGDWAKVQRAVCMLSNTTAIAEAW 571
TIQFVDWCPTGFK+GI Y+PP VPG AKV RAVCMLSNTT+IAEAW
Sbjct: 344 TIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAW 392
Score = 170 bits (413), Expect = 2e-43
Identities = 100/221 (45%), Positives = 121/221 (54%), Gaps = 1/221 (0%)
Frame = +3
Query: 3 DCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTN 182
DC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTN
Sbjct: 203 DCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTN 262
Query: 183 LVPYPRIHFPLVTYAPVISAEKAYMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCC 362
LVPYPRIHFPLVTY+P++SA KA+ S P + P ++A C
Sbjct: 263 LVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDP-RTGRYMATCL 321
Query: 363 TVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATG-PRFNVXXXX 539
+ ++ S S + P + PP +G + N
Sbjct: 322 LYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCM 381
Query: 540 XXXXXXXXKLGARLDHKFRLMYAKAWLFVALVWSGDGMEAG 662
+ +RLDHKF LMY+K FV + G+GME G
Sbjct: 382 LSNTTSIAEAWSRLDHKFDLMYSKR-AFVHW-YVGEGMEEG 420
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 177 bits (432), Expect = 1e-45
Identities = 78/109 (71%), Positives = 89/109 (81%)
Frame = +2
Query: 245 EGLHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 424
+ HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KR
Sbjct: 280 KAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKR 339
Query: 425 TIQFVDWCPTGFKVGINYQPPTVVPGGDWAKVQRAVCMLSNTTAIAEAW 571
TIQFVDWCPTGFK+GI +PP + G + AKV RAVCMLSNTT+IAEAW
Sbjct: 340 TIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAW 388
Score = 167 bits (406), Expect = 1e-42
Identities = 97/221 (43%), Positives = 123/221 (55%), Gaps = 1/221 (0%)
Frame = +3
Query: 3 DCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTN 182
DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTN
Sbjct: 199 DCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTN 258
Query: 183 LVPYPRIHFPLVTYAPVISAEKAYMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCC 362
LVPYPRIHFPLVTYAP++SA KA+ S P + P A ++A C
Sbjct: 259 LVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDP-RAGRYMATCL 317
Query: 363 TVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATG-PRFNVXXXX 539
+ ++ + + + P + PP E + + +
Sbjct: 318 LYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCM 377
Query: 540 XXXXXXXXKLGARLDHKFRLMYAKAWLFVALVWSGDGMEAG 662
+ +RLDHKF LMY+K FV + G+GME G
Sbjct: 378 LSNTTSIAEAWSRLDHKFDLMYSKR-AFVHW-YVGEGMEEG 416
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 78.2 bits (184), Expect = 1e-15
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = +3
Query: 3 DCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTN 182
D F +DNEA+ I L I+ P+Y +LN L+ +++ +T S RF G LN DL + N
Sbjct: 197 DETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVN 256
Query: 183 LVPYPRIHFPLVTYAPV 233
+VP+PR+HF +V +AP+
Sbjct: 257 MVPFPRLHFFMVGFAPL 273
Score = 66.9 bits (156), Expect = 3e-12
Identities = 29/77 (37%), Positives = 44/77 (57%)
Frame = +2
Query: 257 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 436
+ +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + F
Sbjct: 282 QAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYF 341
Query: 437 VDWCPTGFKVGINYQPP 487
V+W P + PP
Sbjct: 342 VEWIPDNVLKAVCSVPP 358
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 61.7 bits (143), Expect = 1e-10
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +3
Query: 3 DCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTN 182
D ++DN A+ I L + PT+ N+L+ ++S+ T +LR+ G +N DL +
Sbjct: 200 DSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIAS 259
Query: 183 LVPYPRIHFPLVTYAP 230
L+P PR HF L +Y P
Sbjct: 260 LIPSPRCHFLLTSYTP 275
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +2
Query: 266 SVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 442
+V ++ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350
Query: 443 WCPTGFKVGINYQPPTV 493
W P +V ++ + P +
Sbjct: 351 WGPASIQVALSKKSPYI 367
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 33.9 bits (74), Expect = 0.023
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -2
Query: 191 RHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDG 30
R + E + H ++ + Q+SSD ++ +D T VG+G AL I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 366 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 500
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +2
Query: 233 HLCREGLHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 403
H C++ H L ACFEP N C H K C L + KD N ++
Sbjct: 351 HTCKKRCHSGLC-----GACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.28
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +3
Query: 219 TYAPVISAEKAYMNSFP---SPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM 389
T PV S+ +S P +P + T+ ++ + +TPV ++ CT TS P
Sbjct: 505 TSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYT 564
Query: 390 *TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 482
T P S ++ S++ PV+ + TTS
Sbjct: 565 ST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +3
Query: 261 SFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSS 440
S +P + T+ ++ + +TPV ++ CT TS P T + S P +N +
Sbjct: 417 SSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCT 474
Query: 441 TGVQPVSRSVSTTSHP 488
T S TS P
Sbjct: 475 TSTSIPYTSTPVTSTP 490
Score = 26.2 bits (55), Expect = 4.6
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Frame = +3
Query: 177 TNLVPYPRIHFPLVTYAPVISAEKAYMNS--FPSPRSQTHASSPPTRW*NATPVMASTWL 350
T VP PL T S Y ++ +P + T+ ++ + +TPV ++
Sbjct: 410 TPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLT 469
Query: 351 AVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 482
CT TS P T + S P +N +T S TS
Sbjct: 470 TTNCTTSTSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 406 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 263
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 147 ALNVDLTEFQTNLVPYPRIHFPLVT--YAPVISAEKAYMNSFPSPRSQTHASSPPTRW*N 320
A +V++ E +TN +P HFP T AP S EK S + T+ N
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATTEEVAPA-SEEKPATGPAEESTSTQNVEQASTQNDN 426
Query: 321 ATPV 332
TP+
Sbjct: 427 GTPI 430
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 186 VPYPRIHFPLVTYAPVISAEKAYMNSFPSPRSQTHASSPPTR 311
VP P P V+ P S + N+ PSP S + AS+ P R
Sbjct: 1239 VPAPSSEAPSVS-TPRSSVPSPHSNASPSPTSSSMASAAPAR 1279
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +3
Query: 402 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 488
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 383 WVRRHHGTAYSKPCTCHDGG 324
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 138 FDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYMNSFPSPRSQTHASSP-PTRW 314
FD +N D+T YP + ++ P+ + + Y+N +S+ +P P+ W
Sbjct: 336 FDSVINKDVTSESRMSTSYPAVLEAFKSFNPIKAPKAEYLN-----QSRASMGNPSPSNW 390
Query: 315 *N 320
N
Sbjct: 391 NN 392
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -2
Query: 185 QVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDGFIVDHE 12
Q ++ VH ++A E R N + QVG +N ++ D+ + F+ D+E
Sbjct: 601 QSQIKSQSVHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYE 658
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 399 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 494
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,241,627
Number of Sequences: 5004
Number of extensions: 69859
Number of successful extensions: 289
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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