Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30498
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 451 NRFQGRYQLPA 483
           NRF G Y++PA
Sbjct: 435 NRFSGEYEIPA 445


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 412 QNQAYYPIRRLVSNRFQGRYQ 474
           Q +A+Y +R   +N FQ +YQ
Sbjct: 17  QAKAHYSLRDFKANIFQVKYQ 37


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 356 MLYRGDVVPKDVNAAIAT 409
           M+Y G  V  D+NA IAT
Sbjct: 319 MMYLGTPVMPDLNALIAT 336


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 231 VISAEKAYMNSFPSPRSQTH 290
           ++S E  Y N++PS   Q H
Sbjct: 54  ILSGEYDYKNNYPSDIDQWH 73


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 231 VISAEKAYMNSFPSPRSQTH 290
           ++S E  Y N++PS   Q H
Sbjct: 54  ILSGEYDYKNNYPSDIDQWH 73


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 230 SHLCREGLHEQLSVAEITNACFEPANQM 313
           SH+  + LH  +SV    N   E AN+M
Sbjct: 135 SHIISKQLHIPVSVLMGANLASEVANEM 162


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 231 VISAEKAYMNSFPSPRSQTH 290
           ++S E  Y N++PS   Q H
Sbjct: 54  ILSGEYDYKNNYPSDIDQWH 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,914
Number of Sequences: 438
Number of extensions: 5108
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)