Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30497
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0103 + 1082077-1082167,1083037-1085477 199 2e-51
02_04_0017 + 18937774-18937864,18938505-18940945 199 2e-51
01_06_0662 + 30987187-30987277,30987825-30990214 196 1e-50
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 163 9e-41
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 126 2e-29
03_05_0511 + 25056018-25059107 58 5e-09
02_04_0148 - 20198407-20201424 58 7e-09
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 40 0.001
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 33 0.23
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 31 1.2
04_01_0330 - 4369326-4370852 30 2.1
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 30 2.1
03_06_0264 + 32738224-32738553,32739298-32739768,32739864-327400... 29 2.8
04_03_0770 + 19420249-19420359,19421691-19421763,19421887-194219... 28 6.4
07_03_0698 - 20765305-20768526 28 8.5
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 199 bits (485), Expect = 2e-51
Identities = 104/206 (50%), Positives = 136/206 (66%), Gaps = 1/206 (0%)
Frame = +1
Query: 1 PMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHPGRLLQ 180
P+ +GL E ID+GR+ PRDD K R++ L+E++ +D A+KIWCFGPE TGP + +
Sbjct: 593 PLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCK 652
Query: 181 RSS-VPQ*N*GLCCGWIPVGR*GRS*AEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTR 357
+ + + G+ + G AEEN+RG+ F + DV LH DAIHRGGGQ+IPT R
Sbjct: 653 GVQYLNEIKDSVVAGFQWASKEGAL-AEENMRGICFEVCDVVLHADAIHRGGGQVIPTAR 711
Query: 358 RCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPCSL*KA 537
R +YA LTA+PRL+EPVYL EIQ PE A+GGIYGVLN++RGHVFEE Q P KA
Sbjct: 712 RVIYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKA 771
Query: 538 YLPVNEVVRFYCRFCGSNNGRNKAFP 615
YLPV E F + + +G +AFP
Sbjct: 772 YLPVIESFGFSSQLRAATSG--QAFP 795
Score = 64.5 bits (150), Expect = 8e-11
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = +2
Query: 140 PRVPDPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEG 250
P PN++VD KGVQYLNEIKDSVVAGFQWA+KEG
Sbjct: 639 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEG 675
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 199 bits (485), Expect = 2e-51
Identities = 104/206 (50%), Positives = 136/206 (66%), Gaps = 1/206 (0%)
Frame = +1
Query: 1 PMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHPGRLLQ 180
P+ +GL E ID+GR+ PRDD K R++ L+E++ +D A+KIWCFGPE TGP + +
Sbjct: 593 PLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCK 652
Query: 181 RSS-VPQ*N*GLCCGWIPVGR*GRS*AEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTR 357
+ + + G+ + G AEEN+RG+ F + DV LH DAIHRGGGQ+IPT R
Sbjct: 653 GVQYLNEIKDSVVAGFQWASKEGAL-AEENMRGICFEVCDVVLHADAIHRGGGQVIPTAR 711
Query: 358 RCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPCSL*KA 537
R +YA LTA+PRL+EPVYL EIQ PE A+GGIYGVLN++RGHVFEE Q P KA
Sbjct: 712 RVIYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKA 771
Query: 538 YLPVNEVVRFYCRFCGSNNGRNKAFP 615
YLPV E F + + +G +AFP
Sbjct: 772 YLPVIESFGFSSQLRAATSG--QAFP 795
Score = 64.5 bits (150), Expect = 8e-11
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = +2
Query: 140 PRVPDPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEG 250
P PN++VD KGVQYLNEIKDSVVAGFQWA+KEG
Sbjct: 639 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEG 675
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 196 bits (479), Expect = 1e-50
Identities = 107/208 (51%), Positives = 136/208 (65%), Gaps = 3/208 (1%)
Frame = +1
Query: 1 PMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHPGRLLQ 180
PM +GLPE IDEGR+ PRDD K R++ L+E++ +D A+KIWCFGPE TGP + +
Sbjct: 589 PMEEGLPEAIDEGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNIVVDMCK 648
Query: 181 RSS-VPQ*N*GLCCGWIPVGR*GRS*AEENLRG--VRFNIYDVTLHTDAIHRGGGQIIPT 351
+ + + G+ + G AEEN+RG + F + DV LH+DAIHRGGGQIIPT
Sbjct: 649 GVQYLNEIKDSVVAGFQWASKEGAL-AEENMRGRGICFEVCDVILHSDAIHRGGGQIIPT 707
Query: 352 TRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPCSL* 531
RR +YA LTA+PRL+EPVYL EIQ PE A+GGIY VLN++RGHVFEE Q P
Sbjct: 708 ARRVIYAAQLTAKPRLLEPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNI 767
Query: 532 KAYLPVNEVVRFYCRFCGSNNGRNKAFP 615
KAYLPV E F + +G +AFP
Sbjct: 768 KAYLPVIESFGFTSTLRAATSG--QAFP 793
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = +2
Query: 140 PRVPDPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEG 250
P PNI+VD KGVQYLNEIKDSVVAGFQWA+KEG
Sbjct: 635 PETTGPNIVVDMCKGVQYLNEIKDSVVAGFQWASKEG 671
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 163 bits (397), Expect = 9e-41
Identities = 88/197 (44%), Positives = 121/197 (61%), Gaps = 1/197 (0%)
Frame = +1
Query: 28 IDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHPGRLLQRSS-VPQ*N 204
ID+ R+ P+DD K R + L+E++ +D A+KIW FGPE GP + + + +
Sbjct: 612 IDDERIGPKDDIKERGKILSEEFGWDKDLAKKIWAFGPETKGPNLLVDMCKGVQYLSEIK 671
Query: 205 *GLCCGWIPVGR*GRS*AEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLT 384
+ G+ + G AEEN+RGV F + DVTLH+D+IHRGGGQ+IPT RR +YA LT
Sbjct: 672 DSVVAGFQWASKEGAL-AEENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYAAQLT 730
Query: 385 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPCSL*KAYLPVNEVVR 564
A PRLMEP+Y +IQ P+ AVG +YGVLN R G + EES+ P S + YLPV +
Sbjct: 731 ASPRLMEPMYQVDIQVPKTAVGNVYGVLNSRNGELVEESERTGTPLSNLRFYLPVAKSFD 790
Query: 565 FYCRFCGSNNGRNKAFP 615
F + +G +AFP
Sbjct: 791 FTEKLRAETSG--QAFP 805
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = +2
Query: 131 ALAPRVPDPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEG 250
A P PN+LVD KGVQYL+EIKDSVVAGFQWA+KEG
Sbjct: 646 AFGPETKGPNLLVDMCKGVQYLSEIKDSVVAGFQWASKEG 685
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 126 bits (304), Expect = 2e-29
Identities = 77/194 (39%), Positives = 104/194 (53%), Gaps = 5/194 (2%)
Frame = +1
Query: 1 PMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQH--PGRL 174
P+ GL EDI+ G V+ K + ++Y++DV AR IW FGPE GP L
Sbjct: 715 PLEKGLAEDIENGLVSLDSRQKEITDFFRQRYQWDVLAARSIWAFGPEKQGPNILLDDTL 774
Query: 175 ---LQRSSVPQ*N*GLCCGWIPVGR*GRS*AEENLRGVRFNIYDVTLHTDAIHRGGGQII 345
+ ++ + + G+ R G +E +R V+F I + + + +HRGGGQII
Sbjct: 775 SVEVDKNLLNAVKDSIVQGFQWGAREGPL-CDEPIRNVKFKILNANIAPEPLHRGGGQII 833
Query: 346 PTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPCS 525
PT RR +Y+ L A PRLMEPVY EIQ P V IY VL+RRRGHV + P
Sbjct: 834 PTARRVVYSAFLMANPRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIY 893
Query: 526 L*KAYLPVNEVVRF 567
+ KA+LPV E F
Sbjct: 894 VVKAFLPVIESFGF 907
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Frame = +2
Query: 131 ALAPRVPDPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEG 250
A P PNIL+D + V+ LN +KDS+V GFQW A+EG
Sbjct: 758 AFGPEKQGPNILLDDTLSVEVDKNLLNAVKDSIVQGFQWGAREG 801
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 58.4 bits (135), Expect = 5e-09
Identities = 30/91 (32%), Positives = 45/91 (49%)
Frame = +1
Query: 295 DVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNR 474
D H++ + GQ+I + ++ +PRL+E +Y CE+ P +G Y VL+R
Sbjct: 854 DAANHSEQYNIFSGQVITAVKEACREAVVQNKPRLVEAMYFCELTTPTEQLGATYAVLSR 913
Query: 475 RRGHVFEESQVEVHPCSL*KAYLPVNEVVRF 567
+R V +E E AYLPV E V F
Sbjct: 914 KRARVLKEEMQEGTSLFTVHAYLPVAESVGF 944
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 58.0 bits (134), Expect = 7e-09
Identities = 35/106 (33%), Positives = 49/106 (46%)
Frame = +1
Query: 334 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEV 513
GQII R A +L ++PRL+EP+Y CE+ P +G +Y VL R V +E E
Sbjct: 843 GQIITAVREACQAAILESKPRLVEPMYFCELTTPTEQLGSMYAVLGNCRARVLKEEMQEG 902
Query: 514 HPCSL*KAYLPVNEVVRFYCRFCGSNNGRNKAFPANA*FEPFGKVP 651
AYL V E F + + G A A + +E + P
Sbjct: 903 TSLFTVHAYLSVAESSEFSKKLRNATAGAASALLAFSHWETVPQDP 948
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = +1
Query: 376 LLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPCSL*KAYLPVNE 555
L A PRL+EP+ E+ PE +G + G LN RRG V + + A++P+ E
Sbjct: 644 LRKAGPRLLEPIMKVEVITPEEHLGDVIGDLNSRRGQVNSFGD-KPGGLKVVDAFVPLAE 702
Query: 556 VVRFYCRFCGSNNGR 600
+ ++ G GR
Sbjct: 703 MFQYVSTLRGMTKGR 717
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 373 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQ 504
C A+P ++EPV E++ P G + G +N+R+G + Q
Sbjct: 665 CYAAARPVILEPVMKVELKVPTEFQGTVTGDMNKRKGIIVGNDQ 708
>07_03_0561 +
19485218-19485242,19485323-19486467,19487354-19487476,
19487553-19487626,19487886-19487946,19488285-19488370,
19488795-19488864,19489026-19489122,19489342-19489481,
19490225-19490308,19490313-19490346,19491833-19491951
Length = 685
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 468 EQTSWSRFRRVPGGGTPMFIVKGLPTCQ*SRSVLLPILRFQQ 593
E+ + ++ P P + G+PT + + VLLP+LRFQ+
Sbjct: 122 EREAAAKGEEPPDPEVPPAVAAGVPTAEPAPEVLLPLLRFQK 163
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 350 VGMIWPPPLWMASVWSVTS 294
+G IWPPP+W S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +1
Query: 382 TAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPCSL*KAYLPVNEVV 561
T +L EP + ++ PE +G + +L +RRG + + +L K +P ++
Sbjct: 497 TVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLI 556
>03_06_0264 +
32738224-32738553,32739298-32739768,32739864-32740007,
32740570-32740671,32741758-32741873,32741959-32742028,
32742308-32742376,32742898-32742948,32743038-32743196
Length = 503
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +2
Query: 107 LPKPVRFGALAPRVPDPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVRLKRIC 271
LP+P R A A P P CS+G G +W K G+R R C
Sbjct: 23 LPRPARSPAAATPSPSPASAACCSRG----------AACGLEWRPKSGLRALRRC 67
>04_03_0770 +
19420249-19420359,19421691-19421763,19421887-19421964,
19422223-19422284,19422404-19422472,19422672-19422700,
19422784-19422991,19423071-19423301,19424079-19424132,
19425344-19426292,19426853-19426863
Length = 624
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 181 FGAIDQDVGVRYPRGQSTKSYG 116
F A D + YPR STKSYG
Sbjct: 456 FSATDLRAPMNYPRAMSTKSYG 477
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 268 LRGVRFNIYDVTLHTDAIHRG----GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 429
L G + ++ D+ L D +HRG ++ P +L P+L+E +++C I+
Sbjct: 870 LSGTKASLIDLFLQVDKLHRGLLSLSIRMDPPGNWDAIDAILLRPPKLLESLHICSIR 927
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,933,279
Number of Sequences: 37544
Number of extensions: 594913
Number of successful extensions: 1562
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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