Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30497
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 222 3e-58
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 1e-29
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 54 9e-08
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 39 0.005
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_6592| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_20533| Best HMM Match : U-box (HMM E-Value=9.6e-25) 30 2.2
SB_38306| Best HMM Match : KNOX2 (HMM E-Value=8.4) 28 6.6
SB_53113| Best HMM Match : RVT_1 (HMM E-Value=2.2) 28 8.7
SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_32712| Best HMM Match : PAN (HMM E-Value=0.18) 28 8.7
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_56120| Best HMM Match : SOUL (HMM E-Value=1.2e-10) 28 8.7
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0) 28 8.7
SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9) 28 8.7
SB_3894| Best HMM Match : SOUL (HMM E-Value=1.4e-10) 28 8.7
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 222 bits (542), Expect = 3e-58
Identities = 118/207 (57%), Positives = 139/207 (67%), Gaps = 2/207 (0%)
Frame = +1
Query: 1 PMPDGLPEDIDEG-RVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHPGRLL 177
P+ + LPEDID+G +NPR DFK RARYL + Y +DV EARKIW FGPEGTGP +
Sbjct: 582 PLEEKLPEDIDDGCEINPRQDFKIRARYLADTYGWDVNEARKIWSFGPEGTGPNLLVDVS 641
Query: 178 QRSS-VPQ*N*GLCCGWIPVGR*GRS*AEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTT 354
+ + + + G+ + G +EN+RGVRFNI+DVTLH DAIHRGGGQIIPT
Sbjct: 642 KGVQYLNEIKDSVVAGFQWATKEGPL-CDENVRGVRFNIHDVTLHADAIHRGGGQIIPTA 700
Query: 355 RRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPCSL*K 534
RR LYAC+LTA+P L+EPVY EIQCPE AVGGIYGVLNRRRG V EES V P + K
Sbjct: 701 RRVLYACMLTAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVK 760
Query: 535 AYLPVNEVVRFYCRFCGSNNGRNKAFP 615
AYLPV E F G +AFP
Sbjct: 761 AYLPVMESFGFTADLRSKTGG--QAFP 785
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/40 (75%), Positives = 32/40 (80%)
Frame = +2
Query: 131 ALAPRVPDPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEG 250
+ P PN+LVD SKGVQYLNEIKDSVVAGFQWA KEG
Sbjct: 626 SFGPEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATKEG 665
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 126 bits (305), Expect = 1e-29
Identities = 73/188 (38%), Positives = 100/188 (53%), Gaps = 6/188 (3%)
Frame = +1
Query: 1 PMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQH------ 162
P+ GL EDI+ +V + K + KY++D+ AR IW FGPE TGP
Sbjct: 559 PLEKGLAEDIENEKVLISWNKKKLGEFFQTKYDWDLLAARSIWAFGPENTGPNILVDDTL 618
Query: 163 PGRLLQRSSVPQ*N*GLCCGWIPVGR*GRS*AEENLRGVRFNIYDVTLHTDAIHRGGGQI 342
P + +S + + G+ R G +E +R V+F I D + + IHRGGGQI
Sbjct: 619 PSEV-DKSLLNTVKDSIIQGFQWATREGPL-CDEPIRNVKFKILDAVIAGEPIHRGGGQI 676
Query: 343 IPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPC 522
IPT RR Y+ L A PRLMEP + E+Q P V +Y VL RRRGHV +++ V P
Sbjct: 677 IPTARRVAYSAFLMATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPL 736
Query: 523 SL*KAYLP 546
KA++P
Sbjct: 737 YTIKAFIP 744
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +2
Query: 131 ALAPRVPDPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEG 250
A P PNILVD + + LN +KDS++ GFQWA +EG
Sbjct: 602 AFGPENTGPNILVDDTLPSEVDKSLLNTVKDSIIQGFQWATREG 645
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 54.4 bits (125), Expect = 9e-08
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +1
Query: 385 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPCSL*KAYLP 546
A PRLMEP + E+Q P V +Y VL RRRGHV +++ V P KA++P
Sbjct: 1 ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIP 54
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 388 QP-RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPCSL*KAYLPVNEVVR 564
QP RLM +Y C IQ +G +Y V+ RR G V E E +A LPV E
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFG 466
Query: 565 F 567
F
Sbjct: 467 F 467
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 115 ARKIWCFGPEGTGP 156
A IW FGP GTGP
Sbjct: 179 ADHIWAFGPRGTGP 192
>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 31.9 bits (69), Expect = 0.53
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 283 FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 417
FN V L + R +I+PT RR + LLT+ +PVY+
Sbjct: 526 FNKLGVFLGLAEVRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570
>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2021
Score = 31.1 bits (67), Expect = 0.93
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 158 WGPVPSGPKHQILRASVTSYS 96
WGPVPSG H ILR + Y+
Sbjct: 1302 WGPVPSGHVHGILRGYIVYYT 1322
>SB_6592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +2
Query: 107 LPKPVRFGALAPRVPDPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVRLKRICVVFDS 286
+ KP+ +A + +PN VD + ++NE + +++ Q ++ ++L IC+V
Sbjct: 897 MEKPLGKSDVAVKELNPN--VDEKDEIDFINEAEIMIISSHQIKSRNIIQLIGICIVLLL 954
Query: 287 TSMM*HSILMPSIEVVAKSFQQL-EDACMH 373
++ LM +A++ + L D C+H
Sbjct: 955 QDLVQVPRLMEFCLQIAEAMEALHRDKCIH 984
>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 629 SNHLARSLPWENRANLPEPNPNKVVQGKP 715
S+H+ +LP +N+A PN + QGKP
Sbjct: 480 SHHIKPALPMDNKAPYVHPNTKQQFQGKP 508
>SB_20533| Best HMM Match : U-box (HMM E-Value=9.6e-25)
Length = 223
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/68 (25%), Positives = 24/68 (35%)
Frame = +2
Query: 512 YTHVHCERPTYLSMKSFGFTADFAVPTTGGTRPSPQMRNSNHLARSLPWENRANLPEPNP 691
Y H++ P Y + A A T G T + + + P+E LP P
Sbjct: 22 YAHLYATPPPYQVTATPAPVATHAADTLGSTTSIGSVTTPTNTGSTAPFERANRLPPIRP 81
Query: 692 NKVVQGKP 715
QG P
Sbjct: 82 GAGAQGMP 89
>SB_38306| Best HMM Match : KNOX2 (HMM E-Value=8.4)
Length = 138
Score = 28.3 bits (60), Expect = 6.6
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +2
Query: 191 YLNEIKDSVVAGFQWAAKEGVRLKRIC 271
++N I ++ F+W+ + +R++RIC
Sbjct: 63 HMNSIHKTIKFTFEWSTSQALRIRRIC 89
>SB_53113| Best HMM Match : RVT_1 (HMM E-Value=2.2)
Length = 359
Score = 27.9 bits (59), Expect = 8.7
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +2
Query: 191 YLNEIKDSVVAGFQWAAKEGVRLKRIC 271
++N I ++ F+W+ + +R++RIC
Sbjct: 284 HMNSIHRTIKFTFEWSTNQALRIRRIC 310
>SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 657
Score = 27.9 bits (59), Expect = 8.7
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +2
Query: 191 YLNEIKDSVVAGFQWAAKEGVRLKRIC 271
++N I ++ F+W+ + +R++RIC
Sbjct: 436 HMNSIHRTIKFTFEWSTNQALRIRRIC 462
>SB_32712| Best HMM Match : PAN (HMM E-Value=0.18)
Length = 542
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = -1
Query: 423 FTKIYRLHETGLSS*QTCIQASSSCWNDLATTSMDGISMECYIIDVESNTTQILFSLTPS 244
FT + G S + Q S CW L S D + I+D ++ +LF S
Sbjct: 362 FTAWLKGSRGGCKSDRQAQQLVSKCWKILKICSEDEDHLTLDIVDFCLCSSNLLFKFVDS 421
Query: 243 LAAHW 229
+ + W
Sbjct: 422 MQSEW 426
>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 386 AVSRHAYKHLLVVGMIWPPPLWMA 315
A+ +H HL + +WP WMA
Sbjct: 13 ALRKHQCSHLFTIKRVWPVTRWMA 36
>SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 4 MPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWC-FGPEGTGPQHPGRL 174
M G+P+ +G N DDF ++ + KYE T W EG PG L
Sbjct: 66 MNHGIPQSEVDGIFNLMDDFFNLSKDVKSKYEKKDTSQPNGWDELEREGNSADRPGDL 123
>SB_56120| Best HMM Match : SOUL (HMM E-Value=1.2e-10)
Length = 205
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 650 LPWENRANLPEP-NPNKVVQGKP 715
LPWENRA P P +P+ +Q P
Sbjct: 117 LPWENRARPPAPKHPDMFIQDFP 139
>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 746
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 4/22 (18%)
Frame = +1
Query: 1 PMPDGLPEDIDEGR----VNPR 54
P+PDG+ E+IDEG+ +NPR
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPR 742
>SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)
Length = 349
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +3
Query: 12 WSARGH**GSRKSPR*LQDSRSVSYRKVRIRCYRSP*DLVLWPRGYRTPTSWSIAPKEFS 191
+S +G+ G+R +DS S S +R++ RS D ++ + T SIAPKE +
Sbjct: 215 FSGKGYVLGARNKAND-KDSHSGSEGNIRVK--RSKQDKIMLDKKTSEKTKGSIAPKEKN 271
Query: 192 TS 197
TS
Sbjct: 272 TS 273
>SB_3894| Best HMM Match : SOUL (HMM E-Value=1.4e-10)
Length = 205
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 650 LPWENRANLPEP-NPNKVVQGKP 715
LPWENRA P P +P+ +Q P
Sbjct: 117 LPWENRARPPAPKHPDMFIQDFP 139
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,524,891
Number of Sequences: 59808
Number of extensions: 644018
Number of successful extensions: 1627
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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