Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30497
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 252 2e-67
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 246 1e-65
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 116 2e-26
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 111 4e-25
AL034365-2|CAA22257.1| 366|Caenorhabditis elegans Hypothetical ... 32 0.47
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 31 0.62
Z70718-9|CAA94678.2| 371|Caenorhabditis elegans Hypothetical pr... 30 1.4
U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF003151-11|AAO61426.1| 402|Caenorhabditis elegans Hypothetical... 28 5.8
AF003151-10|AAK18913.2| 477|Caenorhabditis elegans Hypothetical... 28 5.8
Z66515-12|CAC42333.1| 860|Caenorhabditis elegans Hypothetical p... 28 7.7
Z66515-11|CAA91354.1| 858|Caenorhabditis elegans Hypothetical p... 28 7.7
Z48178-11|CAC42247.1| 860|Caenorhabditis elegans Hypothetical p... 28 7.7
Z48178-10|CAA88206.1| 858|Caenorhabditis elegans Hypothetical p... 28 7.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 252 bits (616), Expect = 2e-67
Identities = 137/233 (58%), Positives = 163/233 (69%), Gaps = 1/233 (0%)
Frame = +1
Query: 1 PMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHPGRLLQ 180
PMPDGL +DI+ G VN RD+FK RA+ L EKYEYDVTEARKIWCFGP+GTGP + +
Sbjct: 602 PMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEARKIWCFGPDGTGPNLLMDVTK 661
Query: 181 RSS-VPQ*N*GLCCGWIPVGR*GRS*AEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTR 357
+ + + G+ R G ++EN+RGVRFN++DVTLH DAIHRGGGQIIPT R
Sbjct: 662 GVQYLNEIKDSVVAGFQWATREGVL-SDENMRGVRFNVHDVTLHADAIHRGGGQIIPTAR 720
Query: 358 RCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPCSL*KA 537
R YA +LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV P + KA
Sbjct: 721 RVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKA 780
Query: 538 YLPVNEVVRFYCRFCGSNNGRNKAFPANA*FEPFGKVPPLGEPCEPSRTKP*Q 696
YLPVNE F SN G +AFP F+ + +P G+P E + TKP Q
Sbjct: 781 YLPVNESFGFTADL-RSNTG-GQAFP-QCVFDHWQVLP--GDPLE-AGTKPNQ 827
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = +2
Query: 155 PNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGV 253
PN+L+D +KGVQYLNEIKDSVVAGFQWA +EGV
Sbjct: 653 PNLLMDVTKGVQYLNEIKDSVVAGFQWATREGV 685
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 246 bits (602), Expect = 1e-65
Identities = 135/233 (57%), Positives = 162/233 (69%), Gaps = 1/233 (0%)
Frame = +1
Query: 1 PMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHPGRLLQ 180
PMPDGL +DI+ G V+ RD+FK RA+Y EKYEY VTEARKIWCFGP+GTGP + +
Sbjct: 602 PMPDGLADDIEGGTVSARDEFKARAKYPGEKYEYAVTEARKIWCFGPDGTGPNLLMDVTK 661
Query: 181 RSS-VPQ*N*GLCCGWIPVGR*GRS*AEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTR 357
+ + + G+ R G ++EN+RGVRFN++DVTLH DAIHRGGGQIIPT R
Sbjct: 662 GVQYLNEIKDSVVAGFQWATREGVL-SDENMRGVRFNVHDVTLHADAIHRGGGQIIPTAR 720
Query: 358 RCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPCSL*KA 537
R YA +LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV P + KA
Sbjct: 721 RVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKA 780
Query: 538 YLPVNEVVRFYCRFCGSNNGRNKAFPANA*FEPFGKVPPLGEPCEPSRTKP*Q 696
YLPVNE F SN G +AFP F+ + +P G+P E + TKP Q
Sbjct: 781 YLPVNESFGFTADL-RSNTG-GQAFP-QCVFDHWQVLP--GDPLE-AGTKPNQ 827
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = +2
Query: 155 PNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGV 253
PN+L+D +KGVQYLNEIKDSVVAGFQWA +EGV
Sbjct: 653 PNLLMDVTKGVQYLNEIKDSVVAGFQWATREGV 685
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 116 bits (278), Expect = 2e-26
Identities = 69/195 (35%), Positives = 98/195 (50%), Gaps = 6/195 (3%)
Frame = +1
Query: 1 PMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQH------ 162
P+ L EDI+ V + + + KY +D+ AR IW FGP+ TGP
Sbjct: 695 PLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIWAFGPDTTGPNILLDDTL 754
Query: 163 PGRLLQRSSVPQ*N*GLCCGWIPVGR*GRS*AEENLRGVRFNIYDVTLHTDAIHRGGGQI 342
P + + + L G+ R G EE +R V+F + D + T+ ++RGGGQ+
Sbjct: 755 PSEV-DKHLLSTVRESLVQGFQWATREGPL-CEEPIRQVKFKLLDAAIATEPLYRGGGQM 812
Query: 343 IPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPC 522
IPT RRC Y+ L A PRLMEP Y E+ P V +Y VL +RRGHV ++ + P
Sbjct: 813 IPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPM 872
Query: 523 SL*KAYLPVNEVVRF 567
AY+PV + F
Sbjct: 873 YTISAYIPVMDSFGF 887
Score = 34.3 bits (75), Expect = 0.088
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +2
Query: 131 ALAPRVPDPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEG 250
A P PNIL+D + + L+ +++S+V GFQWA +EG
Sbjct: 738 AFGPDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREG 781
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 111 bits (268), Expect = 4e-25
Identities = 68/195 (34%), Positives = 97/195 (49%), Gaps = 6/195 (3%)
Frame = +1
Query: 1 PMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQH------ 162
P+ L EDI+ V + + + KY +D+ AR IW FG + TGP
Sbjct: 570 PLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIWAFGLDTTGPNILLDDTL 629
Query: 163 PGRLLQRSSVPQ*N*GLCCGWIPVGR*GRS*AEENLRGVRFNIYDVTLHTDAIHRGGGQI 342
P + + + L G+ R G EE +R V+F + D + T+ ++RGGGQ+
Sbjct: 630 PSEV-DKHLLSTVRESLVQGFQWATREGPL-CEEPIRQVKFKLLDAAIATEPLYRGGGQM 687
Query: 343 IPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVEVHPC 522
IPT RRC Y+ L A PRLMEP Y E+ P V +Y VL +RRGHV ++ + P
Sbjct: 688 IPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPM 747
Query: 523 SL*KAYLPVNEVVRF 567
AY+PV + F
Sbjct: 748 YTISAYIPVMDSFGF 762
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Frame = +2
Query: 155 PNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEG 250
PNIL+D + + L+ +++S+V GFQWA +EG
Sbjct: 621 PNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREG 656
>AL034365-2|CAA22257.1| 366|Caenorhabditis elegans Hypothetical
protein Y69E1A.2 protein.
Length = 366
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -3
Query: 676 KVRTVLPGEGPCQMVRITHLRGRPCSARCWNRKIGSKTERLH*QVGRPFTMNMG 515
K LPG P Q V + +++G P R WN G K +T N+G
Sbjct: 211 KTLDTLPGVNPDQYVALWYMQGEPVMGRVWNE--GGKVAANFSWFNNEYTKNVG 262
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 331 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 498
GGQ++ + A RL+ +Y C + A+G ++ VL++R+ V E
Sbjct: 732 GGQMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSE 787
>Z70718-9|CAA94678.2| 371|Caenorhabditis elegans Hypothetical
protein C04G2.9 protein.
Length = 371
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 676 KVRTVLPGEGPCQMVRITHLRGRPCSARCWN 584
K LPG P Q V + +++G P R WN
Sbjct: 216 KTLDTLPGVNPDQYVALWYMQGEPVMGRVWN 246
>U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical
protein F45E4.7a protein.
Length = 868
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +1
Query: 1 PMPDGLPEDIDEGRVNP---RDDFKTRARYLTEKYEYDVTEARKIWCFGPEGT-GPQHPG 168
P P PE R NP RDD + ++ E+ VTE R I PE T P+ P
Sbjct: 91 PAPIAGPESTSSFRTNPEENRDDEEDNVEETDQEIEFPVTEERSI---DPEITEQPEEPE 147
Query: 169 RL 174
R+
Sbjct: 148 RV 149
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 331 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 477
G Q + T RCL A +L + +M + + + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065
>AF003151-11|AAO61426.1| 402|Caenorhabditis elegans Hypothetical
protein D1007.5b protein.
Length = 402
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 561 SVLLPILRFQQRAEQGLPRKCVIRTIWQ 644
S++LP + + QG+P+K +I +W+
Sbjct: 265 SIMLPCIFVPFKTSQGIPQKILINEVWE 292
>AF003151-10|AAK18913.2| 477|Caenorhabditis elegans Hypothetical
protein D1007.5a protein.
Length = 477
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 561 SVLLPILRFQQRAEQGLPRKCVIRTIWQ 644
S++LP + + QG+P+K +I +W+
Sbjct: 265 SIMLPCIFVPFKTSQGIPQKILINEVWE 292
>Z66515-12|CAC42333.1| 860|Caenorhabditis elegans Hypothetical
protein C05C10.6b protein.
Length = 860
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 238 GPLESSHNRVLNFIEVLNSFGAIDQDVGVRYPRGQSTKSYG 116
GP E +LN IE ++SFG + +D +R + T +G
Sbjct: 777 GPKEDLLRAILNGIESVDSFGYLGEDAIIRLLQALVTVMWG 817
>Z66515-11|CAA91354.1| 858|Caenorhabditis elegans Hypothetical
protein C05C10.6a protein.
Length = 858
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 238 GPLESSHNRVLNFIEVLNSFGAIDQDVGVRYPRGQSTKSYG 116
GP E +LN IE ++SFG + +D +R + T +G
Sbjct: 775 GPKEDLLRAILNGIESVDSFGYLGEDAIIRLLQALVTVMWG 815
>Z48178-11|CAC42247.1| 860|Caenorhabditis elegans Hypothetical
protein C05C10.6b protein.
Length = 860
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 238 GPLESSHNRVLNFIEVLNSFGAIDQDVGVRYPRGQSTKSYG 116
GP E +LN IE ++SFG + +D +R + T +G
Sbjct: 777 GPKEDLLRAILNGIESVDSFGYLGEDAIIRLLQALVTVMWG 817
>Z48178-10|CAA88206.1| 858|Caenorhabditis elegans Hypothetical
protein C05C10.6a protein.
Length = 858
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 238 GPLESSHNRVLNFIEVLNSFGAIDQDVGVRYPRGQSTKSYG 116
GP E +LN IE ++SFG + +D +R + T +G
Sbjct: 775 GPKEDLLRAILNGIESVDSFGYLGEDAIIRLLQALVTVMWG 815
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,237,763
Number of Sequences: 27780
Number of extensions: 466786
Number of successful extensions: 1210
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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