Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30497
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.0  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 656 WENRANLPEPN 688
           WENRA +PE N
Sbjct: 346 WENRATIPELN 356


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 152 PVPSGPKHQILRASVTSYSYFSVRY 78
           P+P  P H +L A+V   S +  RY
Sbjct: 80  PLPIEPWHGVLNATVLPNSCYQERY 104


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 152 PVPSGPKHQILRASVTSYSYFSVRY 78
           P+P  P H +L A+V   S +  RY
Sbjct: 80  PLPIEPWHGVLNATVLPNSCYQERY 104


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 442 AVGGIYGVLNRRRGHVFEESQV-EVH 516
           A GGIY + N+RR  + E   V E+H
Sbjct: 317 AEGGIYDISNKRRLGLTEYQAVKEMH 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,896
Number of Sequences: 438
Number of extensions: 5880
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)