Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30496
         (563 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    26   0.19 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    25   0.45 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   5.5  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.6  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    21   9.6  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 221 TVIAICWSVIPRRRPCIFFTKLGCIL 144
           +++ +C+S++    PC+FF  LG IL
Sbjct: 220 SIVFVCFSLVEDTLPCVFF--LGSIL 243


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 337 LMVITISTVRMRGALIV---RKKVSQLLVLVCSKVLSPFPE 224
           L+   I+ V M G +++    K  SQ  V +C K++  FPE
Sbjct: 278 LVQTAITLVAMCGLVLICDSAKSESQQTVFLCYKLMEKFPE 318


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 87  QSYRPTSNI 113
           QSYRPT NI
Sbjct: 246 QSYRPTGNI 254


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = -3

Query: 267 CSYWYVQKYYHRFQN 223
           C  WY   YY   QN
Sbjct: 34  CDPWYNPYYYQYLQN 48


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 428 MESNILGYLWHMNVFISLFV 487
           ++ NI GY +  + F+SLF+
Sbjct: 70  VDCNIGGYDFPKDTFLSLFI 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,749
Number of Sequences: 336
Number of extensions: 2833
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)