Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30496
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    27   1.9  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   2.5  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   5.8  

>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 36  QNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPS-YSQDAAQFSE 167
           + N+ N   NH  +DG + YRP  +      +PS Y +   Q S+
Sbjct: 455 ETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNPSDYGRQGRQSSQ 499


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 132 PSYSQDAAQFSEEYAGTPSGYNAPT 206
           P+   +A  F E  AG P G+NAP+
Sbjct: 366 PTMPSEAKGFIESGAGQPLGFNAPS 390


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = +3

Query: 9   SHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSE 167
           S    +    +N Y+   N   S GG++   +++  S+   PS + D A + +
Sbjct: 103 SRRHDDSSYSSNKYSTGGNDSYSSGGRNEDYSTSGGSYTTDPSRTDDTASYGQ 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,370
Number of Sequences: 5004
Number of extensions: 46482
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)