Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30496
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    29   2.6  
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192...    28   4.5  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    27   7.8  

>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 90   SYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPS 188
            SY PTS  +S   SPSY+  +A++S  +A +PS
Sbjct: 1731 SYSPTSPNYS-PTSPSYNPSSAKYSPSHAYSPS 1762



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 75   SDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAP 203
            S    +Y PTS  +S   SPSYSQ +  +S     T SG  +P
Sbjct: 1770 SQTSPNYSPTSPTYS-PTSPSYSQPSPSYSPTSPYTTSGGPSP 1811


>10_08_0523 -
           18518158-18518442,18518786-18518899,18518994-18519219,
           18519364-18519470,18519809-18519964,18520100-18520210
          Length = 332

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 21  SEDGVQNNSYNVQENHEPSDGG-QSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGY- 194
           S +G   NSYN  E  E S GG ++ R TS         S +   AQ S   A   +G+ 
Sbjct: 117 SVNGGFMNSYNASERRESSKGGKETNRRTSVPSQAPAKSSSATHKAQASSHGAKKANGHA 176

Query: 195 -NAP 203
            NAP
Sbjct: 177 PNAP 180


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 66   HEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYN 197
            + P+  G  Y PTS  +S   SPSY+  + +++  +A +PS  N
Sbjct: 1787 YSPTSPG--YSPTSPSYS-PSSPSYNPSSVKYTPSHAYSPSSPN 1827


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,459
Number of Sequences: 37544
Number of extensions: 266305
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)