Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30496
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38931| Best HMM Match : TP2 (HMM E-Value=6.7)                       31   0.86 
SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)                29   2.0  
SB_7422| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                 29   3.5  
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  29   3.5  
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)                   29   3.5  
SB_49799| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_48352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_13775| Best HMM Match : MgtE_N (HMM E-Value=1.4)                    28   6.1  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  28   6.1  
SB_28792| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_32807| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_38931| Best HMM Match : TP2 (HMM E-Value=6.7)
          Length = 251

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 3   HNSHEASE--DGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQ-DAAQFSEEY 173
           H+S   +E    +   SY   E+   SDGG+SY  T+  H  + SP  S  D  + S EY
Sbjct: 114 HSSEGKAEYRSAMNTLSYQRTESIAASDGGKSYSETAPYHYEQLSPPSSHPDDYKDSREY 173

Query: 174 A 176
           A
Sbjct: 174 A 174


>SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 852

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 415 SFTSNGIKYSWISMAYERFYKLVCYSVCYQMLM 513
           S  +N ++   I+   ERF+  VCY+ CY  L+
Sbjct: 612 SIFTNLVEPDAITCTVERFFSSVCYTTCYAPLL 644


>SB_7422| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 136

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 403 NLPCSFTSNGIKYSWISMAYERFYKLVC 486
           N  C    NG+KY W   +  RFY++ C
Sbjct: 26  NTFCRRNKNGMKYRWKYPSSRRFYRVSC 53


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 9   SHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP- 185
           S  +S     +N+Y  Q   +   G   + PTSN    + + S S  A + SE +   P 
Sbjct: 90  SKPSSASASPSNTYRTQNTDQVKSGSSIHAPTSNKDRIK-AVSSSAMAPKTSERFTTKPG 148

Query: 186 SGYNAPT 206
           S   APT
Sbjct: 149 SSIGAPT 155



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 9    SHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP- 185
            S   S     +N+Y  Q   +   G   + PTSN    + + S S  A + SE +   P 
Sbjct: 1484 SKPCSASASPSNTYRTQNTDQVKSGSSIHAPTSNEDRIK-AVSSSAMAPKTSERFTTKPG 1542

Query: 186  SGYNAPT 206
            S  +APT
Sbjct: 1543 SSIDAPT 1549



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 39  NNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP-SGYNAPT 206
           +N+Y  Q   +   G   + PTSN    + + S S  A + SE +   P S  +APT
Sbjct: 674 SNTYRTQNTDQVKSGSSIHAPTSNEDRIK-AVSSSAMAPKTSERFTTKPGSSIDAPT 729


>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
          Length = 754

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 9   SHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP- 185
           S   S     +N+Y  Q   +   G   + PTSN    + + S S  A + SE +   P 
Sbjct: 355 SKPCSASASPSNTYRTQNTDQVKSGSSIHAPTSNEDRIK-AVSSSAMAPKTSERFTTKPG 413

Query: 186 SGYNAPT 206
           S  +APT
Sbjct: 414 SSIDAPT 420


>SB_49799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 12  HEASEDG--VQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQ 146
           HE  + G  ++ ++ N+  + +PS  G+    T+NI +  G+ SYS+
Sbjct: 105 HEIGDQGQVIERSAINIIIHEDPSCAGKFVNVTTNITNSTGNWSYSK 151


>SB_48352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 132 PSYSQDAAQFSEEYAGTPSGYNAP 203
           P  S  A+ +S   AGTPSGY  P
Sbjct: 16  PDPSSSASYWSRSPAGTPSGYTGP 39


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 3   HNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQ 146
           H +H   E   Q+  +  Q   + ++  +S +   ++ SFEG PSY +
Sbjct: 732 HQAHPRVERAYQSLVFLFQYYSDGTEVSESDKENQDVASFEGLPSYER 779


>SB_13775| Best HMM Match : MgtE_N (HMM E-Value=1.4)
          Length = 269

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 25  KMVYKIIPIMFKKIMNHLMAGSRIG--LRQIFTPLKAAPVIVK 147
           K+V +I  ++FK +  + MAG++IG     + +  K   VI++
Sbjct: 166 KLVPQIAKLLFKLLKKYAMAGAKIGDNYEMVLSAFKTMTVIIR 208


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 39  NNSYNVQENHEPSDGGQSYRPT-SNIHSFEGSPSYSQDAAQFSEEY 173
           NN YN + N+E ++    Y    +N ++ E +  Y+ +  +++ EY
Sbjct: 250 NNEYNTEYNNEYNEYNNDYNTEYNNEYNTEYNTEYNTEYTEYNTEY 295


>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1026

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 39  NNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP-SGYNAPT 206
           +N+Y  Q   +   G   + PTSN    + + S S  A + SE +   P S  +APT
Sbjct: 671 SNTYRTQNTDQVKSGSSIHAPTSNEDRIK-AVSSSAMAPKTSERFTTKPGSSIDAPT 726


>SB_28792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 6   NSHEASEDGVQNNSYNVQENHEPSD 80
           NSH   +DG+ +NS+  +++  PSD
Sbjct: 64  NSHATRDDGMSSNSHATRDDGMPSD 88


>SB_32807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 9  SHEASEDGVQNNSYNVQENHEPSD 80
          SHE  +DG+ +NS+  +++  PSD
Sbjct: 5  SHETRDDGMPSNSHATRDDGMPSD 28


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,479,503
Number of Sequences: 59808
Number of extensions: 324343
Number of successful extensions: 959
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)