Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30496
         (563 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT007050-1|AAP35699.1|  501|Homo sapiens chromodomain helicase D...    29   8.5  
BC020810-1|AAH20810.1|  501|Homo sapiens chromodomain helicase D...    29   8.5  
BC007347-1|AAH07347.1|  501|Homo sapiens chromodomain helicase D...    29   8.5  
AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein.                 29   8.5  

>BT007050-1|AAP35699.1|  501|Homo sapiens chromodomain helicase DNA
           binding protein 2 protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 6   NSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQ 158
           +SH ASE+   ++S +  E+ + SD G  +   SN  S E S S S+  ++
Sbjct: 20  SSHSASEEASGSDSGSQSESEQGSDPGSGHGSESN-SSSESSESQSESESE 69


>BC020810-1|AAH20810.1|  501|Homo sapiens chromodomain helicase DNA
           binding protein 2 protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 6   NSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQ 158
           +SH ASE+   ++S +  E+ + SD G  +   SN  S E S S S+  ++
Sbjct: 20  SSHSASEEASGSDSGSQSESEQGSDPGSGHGSESN-SSSESSESQSESESE 69


>BC007347-1|AAH07347.1|  501|Homo sapiens chromodomain helicase DNA
           binding protein 2 protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 6   NSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQ 158
           +SH ASE+   ++S +  E+ + SD G  +   SN  S E S S S+  ++
Sbjct: 20  SSHSASEEASGSDSGSQSESEQGSDPGSGHGSESN-SSSESSESQSESESE 69


>AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein.
          Length = 1739

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 6   NSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQ 158
           +SH ASE+   ++S +  E+ + SD G  +   SN  S E S S S+  ++
Sbjct: 20  SSHSASEEASGSDSGSQSESEQGSDPGSGHGSESN-SSSESSESQSESESE 69


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,200,127
Number of Sequences: 237096
Number of extensions: 1485171
Number of successful extensions: 3205
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3205
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)