Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30496
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   0.70 
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   1.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.9  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 380 LFNKTLY*NLKQENTNGNNYFHRPN 306
           L NKT++ N    N N NNY +  N
Sbjct: 85  LSNKTIHNNNNYNNNNYNNYNYNNN 109



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 398 TYYNYILFNKTLY*NLKQENTNGNNY 321
           T +N   +N   Y N    N N NNY
Sbjct: 89  TIHNNNNYNNNNYNNYNYNNNNYNNY 114


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 380 LFNKTLY*NLKQENTNGNNY 321
           L NKT++ N    N N NNY
Sbjct: 85  LSNKTIHNNNNYNNNNYNNY 104


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 380 LFNKTLY*NLKQENTNGNNYFHRPN 306
           L NKT++ N    N N NN ++  N
Sbjct: 318 LSNKTIHNNNNYNNNNYNNNYNNYN 342


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 474 IKTFICHRYPRIFDSI 427
           + TF+CH+Y   F+ +
Sbjct: 49  VPTFMCHKYGLRFEEV 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,543
Number of Sequences: 438
Number of extensions: 3123
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)