Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30496
(563 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 30 0.93
At5g45400.1 68418.m05579 replication protein, putative similar t... 29 1.6
At4g40020.1 68417.m05666 hypothetical protein 29 1.6
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 2.1
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 2.1
At3g52290.1 68416.m05747 calmodulin-binding family protein simil... 29 2.8
At5g66370.1 68418.m08368 hypothetical protein similar to unknown... 28 3.7
At5g19870.1 68418.m02363 expressed protein contains Pfam profile... 28 3.7
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 3.7
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated... 28 5.0
At4g21440.1 68417.m03099 myb family transcription factor (MYB102... 27 6.5
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ... 27 6.5
At5g18520.1 68418.m02187 expressed protein 27 8.7
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 8.7
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-... 27 8.7
At2g25970.1 68415.m03117 KH domain-containing protein 27 8.7
At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase fa... 27 8.7
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 30.3 bits (65), Expect = 0.93
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +3
Query: 6 NSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP 185
+S ++ G + S + + P+DGG T + S GSPSY D S AG P
Sbjct: 136 SSGDSGSPGSDSGSPSA-DTGSPTDGGSYGDTTGDSGSSAGSPSYPSDDG--SGSTAGGP 192
Query: 186 SG 191
SG
Sbjct: 193 SG 194
>At5g45400.1 68418.m05579 replication protein, putative similar to
replication protein A 70kDa [Oryza sativa (japonica
cultivar-group)] GI:13536993; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain, PF04057:
Replication factor-A protein 1, N-terminal domain
Length = 853
Score = 29.5 bits (63), Expect = 1.6
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = +3
Query: 3 HNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSN------IHSFEGSPSYSQDAAQFS 164
HNS +A V NS Q H SD G+ Y ++N +H+ + Y Q Q S
Sbjct: 169 HNSSDAGRYCVSANSPQPQVVHSSSDAGR-YGVSANSPQRQVVHNSPDAGRYGQ--PQVS 225
Query: 165 EEYAGTPSGY 194
+ Y GT SGY
Sbjct: 226 QRY-GTGSGY 234
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 3 HNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGS 131
HN + E+ N N QEN + S G S P+S+ + F+GS
Sbjct: 466 HNKETSEEETKNANGGNHQENSDESGEGNS--PSSDSYLFKGS 506
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.1 bits (62), Expect = 2.1
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Frame = +3
Query: 9 SHEASE-DGVQNN--SYNVQENHEPSDGGQSYRPTSNIHSFEGSPS------YSQDAAQF 161
S+E+S DG + SY E GQ+ P + I S++GS S Y +A
Sbjct: 151 SYESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPSYDGSGSYPPPTGYGMEAVPP 210
Query: 162 SEEYAGTPSGYNAP 203
Y+G P Y P
Sbjct: 211 PTSYSGGPPSYGGP 224
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.1 bits (62), Expect = 2.1
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Frame = +3
Query: 9 SHEASE-DGVQNN--SYNVQENHEPSDGGQSYRPTSNIHSFEGSPS------YSQDAAQF 161
S+E+S DG + SY E GQ+ P + I S++GS S Y +A
Sbjct: 151 SYESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPSYDGSGSYPPPTGYGMEAVPP 210
Query: 162 SEEYAGTPSGYNAP 203
Y+G P Y P
Sbjct: 211 PTSYSGGPPSYGGP 224
>At3g52290.1 68416.m05747 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 430
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 87 QSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPT 206
QS +P + HS GS ++D F+ ++ + GY APT
Sbjct: 336 QSEQPCNRRHSTCGSIPSTRDDESFTSSFSQSVPGYMAPT 375
>At5g66370.1 68418.m08368 hypothetical protein similar to unknown
protein (emb CAB62624.1)
Length = 150
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +3
Query: 3 HNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGT 182
H+ H+ N YN + SY P+ N +S + P YSQ A +
Sbjct: 83 HHHHQHHYPHEPNLHYNSDSYYGQPPSYNSYWPSDNCYSRQHPPYYSQSLAMQPYHHQYP 142
Query: 183 PSGYN 197
GY+
Sbjct: 143 YPGYS 147
>At5g19870.1 68418.m02363 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 276
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 57 QENHEPSDGGQSYRPTSNIHSFEGS 131
Q+NH+P D P++++H+FE S
Sbjct: 71 QKNHQPFDPNDGTIPSNHLHNFEHS 95
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 9 SHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPS 188
+ +AS V N S + +E +EPSDG ++ P +++ + S ++ + E+ PS
Sbjct: 735 ARDASASTVANGSES-EETYEPSDGDTAHVPGTSVEAAGESKLVTRMEVEIPEKTHSDPS 793
>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
protein, Candida albicans, PIR2:S58135
Length = 343
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 9 SHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPS 137
S+ +S +G ++N Y+ NH S G T + H+ S S
Sbjct: 126 SNHSSGNGSRHNGYSSGSNHSSSTGSNHSSSTGSTHNNHSSGS 168
>At4g21440.1 68417.m03099 myb family transcription factor (MYB102)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 350
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +3
Query: 93 YRPTSNIHS---FEGSPSYSQDAAQFSEEYAGTPSGYNAPT 206
Y P+ N +S F PSYS + F+ TPS +PT
Sbjct: 269 YNPSFNDYSSSNFVLDPSYSDQSFNFANSVLNTPSSSPSPT 309
>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
protein / G-protein (XLG) identical to extra-large
G-protein (XLG) [Arabidopsis thaliana] GI:3201680
Length = 888
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 132 PSYSQDAAQFSEEYAGTPSGYNAP 203
P D F+EEY G P YN P
Sbjct: 2 PLKEDDCCLFAEEYDGPPLSYNIP 25
>At5g18520.1 68418.m02187 expressed protein
Length = 440
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 436 KYSWISMAYERFYKLVCYSVCYQM 507
KY W+S A E LV Y + + M
Sbjct: 386 KYQWVSFAAEEIVSLVFYVIMFHM 409
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 48 YNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPT 206
Y+V E EP++ + +PTS+ P D ++ + A + + +++PT
Sbjct: 484 YSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGT-YATQSAASETTFSSPT 535
>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 971
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 48 YNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPT 206
Y+V E EP++ + +PTS+ P D ++ + A + + +++PT
Sbjct: 507 YSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGT-YATQSAASETTFSSPT 558
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 48 YNVQENHEPSDGGQSYRP--TSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPTXXXXX 221
Y Q++ +PS GG S P T+ + ++ + Y Q + ++ G YNA
Sbjct: 393 YGQQQSQQPSSGGSSAPPTDTTGYNYYQHASGYGQAGQGYQQDGYG---AYNASQQSGYG 449
Query: 222 XXXXXDNTFEHTNTSN 269
D + +T+N
Sbjct: 450 QAAGYDQQGGYGSTTN 465
>At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase
family protein simlar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 585
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 63 NHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYN 197
+H PSD S+R +S+ H D ++ +Y+ PS Y+
Sbjct: 204 SHRPSDFDPSFRGSSSSHRPSDYSRRPSDYSRRPSDYSRRPSDYS 248
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,532,427
Number of Sequences: 28952
Number of extensions: 225651
Number of successful extensions: 577
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -