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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30495
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   132   6e-32
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   128   9e-31
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    32   0.084
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    29   0.59 
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    26   5.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   7.3  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   7.3  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    26   7.3  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   7.3  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   7.3  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  132 bits (319), Expect = 6e-32
 Identities = 64/86 (74%), Positives = 71/86 (82%)
 Frame = +2

Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433
           +PADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  
Sbjct: 73  NPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRA 132

Query: 434 DHQPITEASYVNIPVIALCNTDSPLD 511
           D Q I EAS+VNIPVIALC+TDS L+
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILN 158



 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = +3

Query: 66  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 245
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 246 AIETP 260
            IE P
Sbjct: 70  TIENP 74



 Score = 32.3 bits (70), Expect = 0.084
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +1

Query: 514 VDIAIPCNTKSSHSIGLMWWVVGT*SVEGFRGVLSP*TSAGDVV 645
           VD+AIP N K   SIGL W+++    V   RG +S  T+A +V+
Sbjct: 160 VDVAIPINNKGYKSIGLAWYLLAR-EVLRLRGNISR-TTAWEVM 201


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  128 bits (309), Expect = 9e-31
 Identities = 63/100 (63%), Positives = 76/100 (76%)
 Frame = +2

Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433
           +PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  
Sbjct: 72  NPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRA 131

Query: 434 DHQPITEASYVNIPVIALCNTDSPLDLWTLLSHATPSLPT 553
           D Q I EAS+VNIPVIALC+TDS      +L+H   ++PT
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165



 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 34/69 (49%), Positives = 52/69 (75%)
 Frame = +3

Query: 54  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 233
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 234 RAVVAIETP 260
           R +  IE P
Sbjct: 65  RVIATIENP 73



 Score = 34.7 bits (76), Expect = 0.016
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = +1

Query: 514 VDIAIPCNTKSSHSIGLMWWVVGT*SVEGFRGVLS 618
           VDIAIP N K   SIGL+W+++    V   RG LS
Sbjct: 159 VDIAIPTNNKGRKSIGLIWYLLAR-EVLRVRGTLS 192


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 32.3 bits (70), Expect = 0.084
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -3

Query: 668 PLEEPIQPTTSPALVHGESTPRKPSTLHVPTTHHIKPIEWEDLVLHG 528
           PL +  QPTTS       STP  P    VP TH+  P+       HG
Sbjct: 18  PLRQMSQPTTSAPSNSASSTPYSPQ--QVPLTHNSYPLSTPSSFQHG 62


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 401 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDS 502
           P L+++L+P ++     EA   ++P I + +TD+
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDA 213


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = -3

Query: 719 PLGFVGSTLFDFSFQGSPLEEPIQPTTSPALVHGESTPRKPSTLHVPTTHHIKPIEWEDL 540
           PL F    +++FS      E     ++        +T R P   H P  ++ K I     
Sbjct: 29  PLNFYDEPIYNFS--SGHEENQSHKSSKLTFFKPSNTKRSP---HTPMQNNAKAIRLSTT 83

Query: 539 VLHGIAMSTNLVG 501
           V HGI  +++L G
Sbjct: 84  VRHGIFKNSDLDG 96


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = -1

Query: 652 FNPQHPQRLFTGKAHHESLQHFT----CQQPTTSNQ*SGKT 542
           FNPQH  R++      + +  FT    C + T+  Q S KT
Sbjct: 722 FNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -1

Query: 451 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 284
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 413 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLDLWTLLSH 532
           I  +P Q H P +  + VN  V  L NT S  + W+ L H
Sbjct: 359 ICYEPPQ-HVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDH 397


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 707 VGSTLFDFSFQGSPLEEPIQPTTSPALVHGESTPRKPSTL 588
           +G +  D +   SP   PI   T P L   +STP KP++L
Sbjct: 326 LGQSAVDLTTPSSP---PIPRHTKPKLSTTQSTPVKPASL 362


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = -3

Query: 803 QGVSIPRSSWDRGPLPSGF*AGYPTSLVPLGFVGSTLFDFSFQGSPLEEPIQPTTSPALV 624
           Q +S+ R     G  PS F      S +P   V +T    S   + L  PI PTT+PA+V
Sbjct: 263 QLLSMYRDQVSHGVTPSTF--RNHESFMPTQLVSATELSKSVDNAVL--PIPPTTAPAVV 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,806,654
Number of Sequences: 5004
Number of extensions: 89730
Number of successful extensions: 259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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