BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30495 (814 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 132 6e-32 SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 128 9e-31 SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 32 0.084 SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 29 0.59 SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 26 5.5 SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 7.3 SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 7.3 SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 26 7.3 SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 26 7.3 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 7.3 >SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein S0B|Schizosaccharomyces pombe|chr 1|||Manual Length = 287 Score = 132 bits (319), Expect = 6e-32 Identities = 64/86 (74%), Positives = 71/86 (82%) Frame = +2 Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433 +PADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP Sbjct: 73 NPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRA 132 Query: 434 DHQPITEASYVNIPVIALCNTDSPLD 511 D Q I EAS+VNIPVIALC+TDS L+ Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILN 158 Score = 85.0 bits (201), Expect = 1e-17 Identities = 35/65 (53%), Positives = 50/65 (76%) Frame = +3 Query: 66 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 245 VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR + Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69 Query: 246 AIETP 260 IE P Sbjct: 70 TIENP 74 Score = 32.3 bits (70), Expect = 0.084 Identities = 19/44 (43%), Positives = 27/44 (61%) Frame = +1 Query: 514 VDIAIPCNTKSSHSIGLMWWVVGT*SVEGFRGVLSP*TSAGDVV 645 VD+AIP N K SIGL W+++ V RG +S T+A +V+ Sbjct: 160 VDVAIPINNKGYKSIGLAWYLLAR-EVLRLRGNISR-TTAWEVM 201 >SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A |Schizosaccharomyces pombe|chr 2|||Manual Length = 292 Score = 128 bits (309), Expect = 9e-31 Identities = 63/100 (63%), Positives = 76/100 (76%) Frame = +2 Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433 +PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP Sbjct: 72 NPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRA 131 Query: 434 DHQPITEASYVNIPVIALCNTDSPLDLWTLLSHATPSLPT 553 D Q I EAS+VNIPVIALC+TDS +L+H ++PT Sbjct: 132 DAQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165 Score = 85.0 bits (201), Expect = 1e-17 Identities = 34/69 (49%), Positives = 52/69 (75%) Frame = +3 Query: 54 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 233 G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64 Query: 234 RAVVAIETP 260 R + IE P Sbjct: 65 RVIATIENP 73 Score = 34.7 bits (76), Expect = 0.016 Identities = 18/35 (51%), Positives = 22/35 (62%) Frame = +1 Query: 514 VDIAIPCNTKSSHSIGLMWWVVGT*SVEGFRGVLS 618 VDIAIP N K SIGL+W+++ V RG LS Sbjct: 159 VDIAIPTNNKGRKSIGLIWYLLAR-EVLRVRGTLS 192 >SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 413 Score = 32.3 bits (70), Expect = 0.084 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = -3 Query: 668 PLEEPIQPTTSPALVHGESTPRKPSTLHVPTTHHIKPIEWEDLVLHG 528 PL + QPTTS STP P VP TH+ P+ HG Sbjct: 18 PLRQMSQPTTSAPSNSASSTPYSPQ--QVPLTHNSYPLSTPSSFQHG 62 >SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|Schizosaccharomyces pombe|chr 1|||Manual Length = 263 Score = 29.5 bits (63), Expect = 0.59 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = +2 Query: 401 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDS 502 P L+++L+P ++ EA ++P I + +TD+ Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDA 213 >SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces pombe|chr 2|||Manual Length = 581 Score = 26.2 bits (55), Expect = 5.5 Identities = 19/73 (26%), Positives = 30/73 (41%) Frame = -3 Query: 719 PLGFVGSTLFDFSFQGSPLEEPIQPTTSPALVHGESTPRKPSTLHVPTTHHIKPIEWEDL 540 PL F +++FS E ++ +T R P H P ++ K I Sbjct: 29 PLNFYDEPIYNFS--SGHEENQSHKSSKLTFFKPSNTKRSP---HTPMQNNAKAIRLSTT 83 Query: 539 VLHGIAMSTNLVG 501 V HGI +++L G Sbjct: 84 VRHGIFKNSDLDG 96 >SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosaccharomyces pombe|chr 2|||Manual Length = 2358 Score = 25.8 bits (54), Expect = 7.3 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Frame = -1 Query: 652 FNPQHPQRLFTGKAHHESLQHFT----CQQPTTSNQ*SGKT 542 FNPQH R++ + + FT C + T+ Q S KT Sbjct: 722 FNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762 >SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 25.8 bits (54), Expect = 7.3 Identities = 16/56 (28%), Positives = 25/56 (44%) Frame = -1 Query: 451 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 284 S GL L R + E F + +S + W T + + G+RG ++ EGP Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 25.8 bits (54), Expect = 7.3 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +2 Query: 413 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLDLWTLLSH 532 I +P Q H P + + VN V L NT S + W+ L H Sbjct: 359 ICYEPPQ-HVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDH 397 >SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 501 Score = 25.8 bits (54), Expect = 7.3 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 707 VGSTLFDFSFQGSPLEEPIQPTTSPALVHGESTPRKPSTL 588 +G + D + SP PI T P L +STP KP++L Sbjct: 326 LGQSAVDLTTPSSP---PIPRHTKPKLSTTQSTPVKPASL 362 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 25.8 bits (54), Expect = 7.3 Identities = 21/60 (35%), Positives = 28/60 (46%) Frame = -3 Query: 803 QGVSIPRSSWDRGPLPSGF*AGYPTSLVPLGFVGSTLFDFSFQGSPLEEPIQPTTSPALV 624 Q +S+ R G PS F S +P V +T S + L PI PTT+PA+V Sbjct: 263 QLLSMYRDQVSHGVTPSTF--RNHESFMPTQLVSATELSKSVDNAVL--PIPPTTAPAVV 318 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,806,654 Number of Sequences: 5004 Number of extensions: 89730 Number of successful extensions: 259 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 237 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 259 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 396433620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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