Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30495
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 132 6e-32
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 128 9e-31
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 32 0.084
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 29 0.59
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 26 5.5
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 7.3
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 7.3
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 26 7.3
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 26 7.3
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 7.3
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 132 bits (319), Expect = 6e-32
Identities = 64/86 (74%), Positives = 71/86 (82%)
Frame = +2
Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433
+PADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP
Sbjct: 73 NPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRA 132
Query: 434 DHQPITEASYVNIPVIALCNTDSPLD 511
D Q I EAS+VNIPVIALC+TDS L+
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILN 158
Score = 85.0 bits (201), Expect = 1e-17
Identities = 35/65 (53%), Positives = 50/65 (76%)
Frame = +3
Query: 66 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 245
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 246 AIETP 260
IE P
Sbjct: 70 TIENP 74
Score = 32.3 bits (70), Expect = 0.084
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1
Query: 514 VDIAIPCNTKSSHSIGLMWWVVGT*SVEGFRGVLSP*TSAGDVV 645
VD+AIP N K SIGL W+++ V RG +S T+A +V+
Sbjct: 160 VDVAIPINNKGYKSIGLAWYLLAR-EVLRLRGNISR-TTAWEVM 201
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 128 bits (309), Expect = 9e-31
Identities = 63/100 (63%), Positives = 76/100 (76%)
Frame = +2
Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433
+PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP
Sbjct: 72 NPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRA 131
Query: 434 DHQPITEASYVNIPVIALCNTDSPLDLWTLLSHATPSLPT 553
D Q I EAS+VNIPVIALC+TDS +L+H ++PT
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165
Score = 85.0 bits (201), Expect = 1e-17
Identities = 34/69 (49%), Positives = 52/69 (75%)
Frame = +3
Query: 54 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 233
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 234 RAVVAIETP 260
R + IE P
Sbjct: 65 RVIATIENP 73
Score = 34.7 bits (76), Expect = 0.016
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 514 VDIAIPCNTKSSHSIGLMWWVVGT*SVEGFRGVLS 618
VDIAIP N K SIGL+W+++ V RG LS
Sbjct: 159 VDIAIPTNNKGRKSIGLIWYLLAR-EVLRVRGTLS 192
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 32.3 bits (70), Expect = 0.084
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -3
Query: 668 PLEEPIQPTTSPALVHGESTPRKPSTLHVPTTHHIKPIEWEDLVLHG 528
PL + QPTTS STP P VP TH+ P+ HG
Sbjct: 18 PLRQMSQPTTSAPSNSASSTPYSPQ--QVPLTHNSYPLSTPSSFQHG 62
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 29.5 bits (63), Expect = 0.59
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 401 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDS 502
P L+++L+P ++ EA ++P I + +TD+
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDA 213
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/73 (26%), Positives = 30/73 (41%)
Frame = -3
Query: 719 PLGFVGSTLFDFSFQGSPLEEPIQPTTSPALVHGESTPRKPSTLHVPTTHHIKPIEWEDL 540
PL F +++FS E ++ +T R P H P ++ K I
Sbjct: 29 PLNFYDEPIYNFS--SGHEENQSHKSSKLTFFKPSNTKRSP---HTPMQNNAKAIRLSTT 83
Query: 539 VLHGIAMSTNLVG 501
V HGI +++L G
Sbjct: 84 VRHGIFKNSDLDG 96
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -1
Query: 652 FNPQHPQRLFTGKAHHESLQHFT----CQQPTTSNQ*SGKT 542
FNPQH R++ + + FT C + T+ Q S KT
Sbjct: 722 FNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -1
Query: 451 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 284
S GL L R + E F + +S + W T + + G+RG ++ EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 413 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLDLWTLLSH 532
I +P Q H P + + VN V L NT S + W+ L H
Sbjct: 359 ICYEPPQ-HVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDH 397
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 707 VGSTLFDFSFQGSPLEEPIQPTTSPALVHGESTPRKPSTL 588
+G + D + SP PI T P L +STP KP++L
Sbjct: 326 LGQSAVDLTTPSSP---PIPRHTKPKLSTTQSTPVKPASL 362
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 7.3
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = -3
Query: 803 QGVSIPRSSWDRGPLPSGF*AGYPTSLVPLGFVGSTLFDFSFQGSPLEEPIQPTTSPALV 624
Q +S+ R G PS F S +P V +T S + L PI PTT+PA+V
Sbjct: 263 QLLSMYRDQVSHGVTPSTF--RNHESFMPTQLVSATELSKSVDNAVL--PIPPTTAPAVV 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,806,654
Number of Sequences: 5004
Number of extensions: 89730
Number of successful extensions: 259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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