Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30495
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 122 3e-28
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 122 3e-28
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368 33 0.27
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 32 0.47
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 29 3.3
06_03_0424 - 20648938-20649564,20650588-20650902 29 4.4
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 29 4.4
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.8
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 29 5.8
06_01_0775 - 5795329-5795801,5796582-5796720,5796810-5797049,579... 29 5.8
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 5.8
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706... 28 7.7
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.7
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 122 bits (295), Expect = 3e-28
Identities = 55/85 (64%), Positives = 67/85 (78%)
Frame = +2
Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433
+P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 74 NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT 133
Query: 434 DHQPITEASYVNIPVIALCNTDSPL 508
DHQPI E++ NIP IA C+TDSP+
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPM 158
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +3
Query: 69 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 248
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 249 IETP 260
IE P
Sbjct: 72 IENP 75
Score = 37.5 bits (83), Expect = 0.013
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 502 PTRFVDIAIPCNTKSSHSIGLMWWVVGT*SVEGFRGVLSP 621
P R+VDI IP N K SIG ++W++ V RG + P
Sbjct: 157 PMRYVDIGIPANNKGKQSIGCLFWLLAR-MVLQMRGTILP 195
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 122 bits (295), Expect = 3e-28
Identities = 55/85 (64%), Positives = 67/85 (78%)
Frame = +2
Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433
+P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 74 NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT 133
Query: 434 DHQPITEASYVNIPVIALCNTDSPL 508
DHQPI E++ NIP IA C+TDSP+
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPM 158
Score = 93.1 bits (221), Expect = 2e-19
Identities = 43/75 (57%), Positives = 54/75 (72%)
Frame = +3
Query: 36 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 215
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 216 KLVLAARAVVAIETP 260
KL LAAR +VAIE P
Sbjct: 61 KLQLAARVIVAIENP 75
Score = 37.5 bits (83), Expect = 0.013
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 502 PTRFVDIAIPCNTKSSHSIGLMWWVVGT*SVEGFRGVLSP 621
P R+VDI IP N K +SIG ++W++ V RG + P
Sbjct: 157 PMRYVDIGIPANNKGRNSIGCLFWLLAR-MVLQMRGTILP 195
>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
Length = 601
Score = 33.1 bits (72), Expect = 0.27
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 636 PSACSRGKHTTKAFNTSRANNPPHQTN 556
PS CS+GKH + N + A++P H +N
Sbjct: 388 PSPCSKGKHQFSSHNDNLAHSPDHNSN 414
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 32.3 bits (70), Expect = 0.47
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 734 PTSLVPLGFVGSTLFDFSFQGSPLEEPIQPTTSPALVHGESTPRKPSTL 588
PT ++P S +G P ++P TTS V G TP+K STL
Sbjct: 435 PTYILPESGNKSNSTGLRRRGRPRKKPFPSTTSCVFVPGTETPKKGSTL 483
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +2
Query: 212 GKTCSGCSCCRSHRDPA-DVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQA 388
G+ SGC CR D ++ R RAV AA + P R+TPG +
Sbjct: 54 GRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHSQAR 113
Query: 389 AFREPRLLIVLD 424
RE IV D
Sbjct: 114 LVREMMKSIVAD 125
>06_03_0424 - 20648938-20649564,20650588-20650902
Length = 313
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 243 VAIETPLMCSSSHHGPSVSVLY*SLP 320
V++ TP SSSHH P +S L+ LP
Sbjct: 71 VSLVTPSSISSSHHTPPLSALHIMLP 96
>03_04_0157 +
17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = -3
Query: 719 PLGFVGSTLFDFSFQGSPLEEPIQPTTSPALVHGES-----TPRKPSTLH 585
P+G VG+ ++ QG+ + +P+ T++ V GE+ TP P+TLH
Sbjct: 603 PVG-VGTQCYELVRQGTAVGQPVVHTSAMLQVTGEAEYTDDTPTPPNTLH 651
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 136 TFSAPRWVVAASILVTSSSLRASTSNP 56
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 28.7 bits (61), Expect = 5.8
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -2
Query: 639 IPSACSRGKHTTKAFNTSRANNPPHQTNRVGRLGVAWDSNVHKSSGESVLHKAITGMLTY 460
I + S G +T N+ A + + G AW SN + +SG S + I G+ +
Sbjct: 382 IDAPSSTGTSSTAESNSGSATSVTGANS--GSYSSAW-SNSNSNSG-STMPSGI-GVASN 436
Query: 459 EASVMG*WSCAGSN--TIKRRGSRN 391
S G WS AGSN T+ GS N
Sbjct: 437 AGSSSGSWSNAGSNTGTLSGAGSSN 461
>06_01_0775 -
5795329-5795801,5796582-5796720,5796810-5797049,
5797278-5797313,5797421-5797501,5797937-5797994,
5799440-5799630
Length = 405
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 737 YPTSLVPLGFVGSTLFDFSFQGSPLEEPIQPTTSP 633
YP S+ P G +G LFD + I+PT SP
Sbjct: 345 YPPSMEPQGVLGQILFDVCVPKNVEGWDIKPTVSP 379
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 277 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 369
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>03_05_0823 -
27970038-27970258,27970279-27970544,27970608-27970657,
27971272-27971538,27971633-27972001,27972373-27973278
Length = 692
Score = 28.3 bits (60), Expect = 7.7
Identities = 27/95 (28%), Positives = 44/95 (46%)
Frame = +2
Query: 479 IALCNTDSPLDLWTLLSHATPSLPTLLV*CGGLLAREVLKAFVVCFPREQALGMLWVELV 658
I LC ++LWT +H T ++ ++ +V A V C AL ++ +
Sbjct: 62 IVLCGATHLINLWTFTTH-TKTVAMVMT------VAKVSTAVVSC---ATALMLVHIIPD 111
Query: 659 LLTVNPGKKSQKGLNQQSPREQGLLGTQLKTQKVV 763
LL+V + K +Q RE GL+ TQ +T + V
Sbjct: 112 LLSVKTRELFLKNKAEQLDREMGLIRTQEETGRHV 146
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 143 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 250
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,295,250
Number of Sequences: 37544
Number of extensions: 653783
Number of successful extensions: 1713
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1712
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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