Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30495
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               159   3e-39
SB_52317| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)                 31   1.5  
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   1.5  
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_23676| Best HMM Match : DUF904 (HMM E-Value=0.44)                   29   3.4  
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                29   5.9  
SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32)               29   5.9  
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         29   5.9  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    29   5.9  
SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  
SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  159 bits (385), Expect = 3e-39
 Identities = 72/85 (84%), Positives = 79/85 (92%)
 Frame = +2

Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433
           +PADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP  
Sbjct: 70  NPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRI 129

Query: 434 DHQPITEASYVNIPVIALCNTDSPL 508
           DHQP+TEASYVNIPVIA CNTDSPL
Sbjct: 130 DHQPVTEASYVNIPVIAFCNTDSPL 154



 Score =  107 bits (256), Expect = 1e-23
 Identities = 47/71 (66%), Positives = 58/71 (81%)
 Frame = +3

Query: 48  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 227
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 228 AARAVVAIETP 260
           AAR +V IE P
Sbjct: 61  AARIIVTIENP 71



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 21/39 (53%), Positives = 26/39 (66%)
 Frame = +1

Query: 502 PTRFVDIAIPCNTKSSHSIGLMWWVVGT*SVEGFRGVLS 618
           P R VD+AIPCN K  HSIGLM+W++    V   RG +S
Sbjct: 153 PLRHVDVAIPCNNKGIHSIGLMFWLLAR-EVLRMRGSIS 190


>SB_52317| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
          Length = 681

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -3

Query: 662 EEPIQPTTSPALVHGESTPRKPSTLHVPTTHHIKPIEWEDLVLHGIAMSTNLV 504
           E P +P        GES P  P++ H P  HH      E   +HG+   T L+
Sbjct: 182 ENPFEPIDPGDGDEGESIPMAPTSTHDPFRHHTTD---ETSFIHGVDEHTPLI 231


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -1

Query: 493  VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRST 329
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN RS+
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 213 EKLVLAARAVVAIETPLMCSSSHHGPSVSVL 305
           +K+ LA RA VAI+  L C + +HG    V+
Sbjct: 482 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 512


>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 213 EKLVLAARAVVAIETPLMCSSSHHGPSVSVL 305
           +K+ LA RA VAI+  L C + +HG    V+
Sbjct: 267 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 297


>SB_23676| Best HMM Match : DUF904 (HMM E-Value=0.44)
          Length = 591

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = -3

Query: 725 LVPLGFVGSTLFDFSFQGSPLEEPIQPTTSPALVHGESTPRKPSTLHVPTTHHIKPIEWE 546
           +V LG+V     D   +    E P +P        GES P   ++ H P  HH   I+ E
Sbjct: 122 MVALGYVAK--MDIDPEIPDRENPFEPVDPGGDDGGESIPMTSTSTHDPFRHH--SID-E 176

Query: 545 DLVLHGIAMSTNLV 504
              +HG+   T L+
Sbjct: 177 TSFIHGVDEHTPLI 190


>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1065

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 668  PLEEPIQPTTSPALVHGESTPRKPSTLHVPTTHH 567
            P E+  +  T+P+ VHGE    KP   H     H
Sbjct: 929  PTEKMTEAPTTPSAVHGEEDKNKPHRKHEERERH 962


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 656 PIQPTTSPALVHGESTPRKPSTLHVPTT 573
           P  P+T P+L H  STP  PST   P+T
Sbjct: 443 PSTPST-PSLTHTPSTPSTPSTPSTPST 469



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 656 PIQPTTSPALVHGESTPRKPSTLHVPTT 573
           P  P+T P+L H  STP  PST   P+T
Sbjct: 667 PSTPST-PSLTHTPSTPSTPSTPSTPST 693


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 493 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 335
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32)
          Length = 640

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 665 LEEPIQPTTSPALVHGESTPRKPST 591
           L+ P   T+ P+L+ G+ST +KP T
Sbjct: 234 LDSPEPETSGPSLIPGQSTNKKPKT 258


>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 677 QGSPLEEPIQPTTSPALVHGESTPRKPSTLHVPTTHHIKP 558
           +G P +EP    ++P    G STP++P    VP    I P
Sbjct: 295 RGRPRDEPDAGYSTPQRGSGYSTPQRPPDRGVPRVTRIPP 334


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 493 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 335
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 677  QGSPLEEPIQPTTSPALVHGESTPRKPSTLHVPTTHHIKP 558
            +G P +EP    ++P    G STP++P    VP    I P
Sbjct: 1876 RGRPRDEPDAGYSTPQRGSGYSTPQRPPDRGVPRVTRIPP 1915


>SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 416 VLDPAQDHQPITEASYVNIPVIALCNTDSPLDLWTL 523
           +L PA+  QP+ E     + VI+ C     L LWTL
Sbjct: 399 LLLPAEFTQPVEEPQTEALEVISACLDQGNLGLWTL 434


>SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1091

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 662 EEPIQPTTSPALVHGESTPRKPSTLHVPTTHHIKPIEWEDLVLHGIAMSTNLV 504
           E P +P        GES P   ++ H P  HH   I+ E   +HG+   T L+
Sbjct: 11  ENPFEPVDPGGDDEGESIPMTSTSTHDPFRHH--SID-ETSFMHGVDEHTPLI 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,977,184
Number of Sequences: 59808
Number of extensions: 733887
Number of successful extensions: 2065
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2044
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)