Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30495
(814 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 130 9e-31
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 31 1.3
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 1.3
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 1.3
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 1.3
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 30 1.7
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 30 1.7
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 30 1.7
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 29 4.0
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 29 4.0
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 29 4.0
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 5.2
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 29 5.2
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 5.2
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 29 5.2
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 29 5.2
Z49126-3|CAA88941.2| 374|Caenorhabditis elegans Hypothetical pr... 28 6.9
AL031632-6|CAA21008.1| 338|Caenorhabditis elegans Hypothetical ... 28 6.9
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 28 9.1
Z83233-2|CAB05761.1| 338|Caenorhabditis elegans Hypothetical pr... 28 9.1
U41538-7|AAP31430.1| 465|Caenorhabditis elegans Intermediate fi... 28 9.1
U41538-6|AAG00007.2| 575|Caenorhabditis elegans Intermediate fi... 28 9.1
AF273797-2|AAG15146.1| 338|Caenorhabditis elegans nuclear recep... 28 9.1
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 130 bits (315), Expect = 9e-31
Identities = 58/87 (66%), Positives = 71/87 (81%)
Frame = +2
Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433
+PADV V+S+RP+ QRA+LKFAAHTGAT I GRF+PG TNQIQ F+EPRLL++ DP
Sbjct: 70 NPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDPRI 129
Query: 434 DHQPITEASYVNIPVIALCNTDSPLDL 514
DHQ +TEASYV +PVI+ NT+SPL L
Sbjct: 130 DHQAVTEASYVGVPVISFVNTESPLKL 156
Score = 99.5 bits (237), Expect = 2e-21
Identities = 44/71 (61%), Positives = 56/71 (78%)
Frame = +3
Query: 48 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 227
MSGG AL EEDV K+LA HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEKL+L
Sbjct: 1 MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60
Query: 228 AARAVVAIETP 260
AARA+ A+E P
Sbjct: 61 AARAIAAVENP 71
Score = 46.0 bits (104), Expect = 3e-05
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 484 FVQHRLPTRFVDIAIPCNTKSSHSIGLMWWVV 579
FV P + +DI +PCN K SIGLMWW++
Sbjct: 147 FVNTESPLKLIDIGVPCNNKGERSIGLMWWML 178
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3127 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3180
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3025 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3078
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3026 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3079
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3108 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3161
>Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3127 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3180
>Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3025 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3078
>Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3026 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3079
>Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3108 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3161
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 293 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 454
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 476 VIALCNTDSPLDLWTLLSHATPSLPTLLV*CGGLLAREVLKA 601
++A C+ D P+ +W L +P L T + GG + E L+A
Sbjct: 95 LLATCSRDEPVKIWKLSRDHSPKLATEIDVGGGNVIAECLRA 136
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 476 VIALCNTDSPLDLWTLLSHATPSLPTLLV*CGGLLAREVLKA 601
++A C+ D P+ +W L +P L T + GG + E L+A
Sbjct: 95 LLATCSRDEPVKIWKLSRDHSPKLATEIDVGGGNVIAECLRA 136
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 476 VIALCNTDSPLDLWTLLSHATPSLPTLLV*CGGLLAREVLKA 601
++A C+ D P+ +W L +P L T + GG + E L+A
Sbjct: 95 LLATCSRDEPVKIWKLSRDHSPKLATEIDVGGGNVIAECLRA 136
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 683 KSQKGLNQQSPREQGLLGTQLKTQKVVAPGPM 778
K ++ + P E+G GTQL QK+ AP P+
Sbjct: 95 KKKRNREKLHPMERGFSGTQLVGQKLGAPPPL 126
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 683 KSQKGLNQQSPREQGLLGTQLKTQKVVAPGPM 778
K ++ + P E+G GTQL QK+ AP P+
Sbjct: 95 KKKRNREKLHPMERGFSGTQLVGQKLGAPPPL 126
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 354 SHQVL-LLTRFKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 506
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3338 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3388
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 354 SHQVL-LLTRFKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 506
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 354 SHQVL-LLTRFKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 506
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 354 SHQVL-LLTRFKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 506
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = +1
Query: 265 CVRHLITALRSACCTEVCRAHR-CYAYCG 348
C R T R+ CCT C R C CG
Sbjct: 96 CCRRCCTCCRTCCCTRCCTCCRPCCCGCG 124
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = +1
Query: 265 CVRHLITALRSACCTEVCRAHR-CYAYCG 348
C R T R+ CCT C R C CG
Sbjct: 94 CCRRCCTCCRTCCCTRCCTCCRPCCCGCG 122
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = +1
Query: 265 CVRHLITALRSACCTEVCRAHR-CYAYCG 348
C R T R+ CCT C R C CG
Sbjct: 95 CCRRCCTCCRTCCCTRCCTCCRPCCCGCG 123
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = +1
Query: 265 CVRHLITALRSACCTEVCRAHR-CYAYCG 348
C R T R+ CCT C R C CG
Sbjct: 95 CCRRCCTCCRTCCCTRCCTCCRPCCCGCG 123
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = +1
Query: 265 CVRHLITALRSACCTEVCRAHR-CYAYCG 348
C R T R+ CCT C R C CG
Sbjct: 96 CCRRCCTCCRTCCCTRCCTCCRPCCCGCG 124
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = -3
Query: 734 PTSLVPLGFVGSTLFDFSFQGSPLEEPIQPTTSPALVHGESTPRKPSTLHVPTTHHIKP 558
P S P +T D + +P E+P +PT P + S+P P I P
Sbjct: 80 PASTAPTS-ASATAPDLKKEKAPAEKPSKPTAPPGVQKSSSSPSASKAESRPLRKRISP 137
>Z49126-3|CAA88941.2| 374|Caenorhabditis elegans Hypothetical
protein DH11.4 protein.
Length = 374
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 680 FQGSPLEEPIQPTTSPALVHGESTP-RKPSTLHVPTTHHIKP 558
F+G L E Q T +P+LVH S KPS+ T+ + P
Sbjct: 257 FEGRRLMEQKQTTVNPSLVHKSSVDGSKPSSSSASTSSNDNP 298
>AL031632-6|CAA21008.1| 338|Caenorhabditis elegans Hypothetical
protein Y32B12B.6 protein.
Length = 338
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 273 SSHHGPSVSVLY*SLPRTPVLRLLRGVSHQVLLLTRFKLHSVNLVS*LYWTLHKTI 440
S+HH V +L S P L++ + + + + R K H +N S Y TL T+
Sbjct: 100 SAHHMNRVFLLLNSYPENSNLKIEQMLREETSFVARQKYHEMNWDSWYYITLVSTV 155
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 149 GDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHRDP 259
G C +T+ Y C L+ Y G C + C ++ DP
Sbjct: 409 GGTCTETSSGGYTCSCLSQYFGTNCEEINRC-NYADP 444
>Z83233-2|CAB05761.1| 338|Caenorhabditis elegans Hypothetical
protein K06B4.2 protein.
Length = 338
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 448 Y*SFICQHSCDCFVQHRLPTRFVDIAIPCNTKSSH 552
Y SF+ + C QH+ PTRF DI CN + +
Sbjct: 274 YASFLFRF-CQLKNQHKAPTRFNDILSICNVNNKN 307
>U41538-7|AAP31430.1| 465|Caenorhabditis elegans Intermediate
filament, d protein1, isoform b protein.
Length = 465
Score = 27.9 bits (59), Expect = 9.1
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Frame = +3
Query: 69 LALNEEDVTKMLAATTHLGAE--NVNFQMETYVYKR---RADGTHVINLRRTWEKLVLAA 233
L + E+ +T+ A T + E ++ ++ET V + R++ H L E L +
Sbjct: 350 LRMFEQSLTEKELAVTRMRDECAKLSVELETLVENQINLRSEIAHYRKLMEQAENLRTSY 409
Query: 234 RAVVAIETP--LMCSSSHH-GPSVSV 302
++ I+TP LM +SSHH G S S+
Sbjct: 410 QSDFVIDTPSPLMRTSSHHYGSSYSL 435
>U41538-6|AAG00007.2| 575|Caenorhabditis elegans Intermediate
filament, d protein1, isoform a protein.
Length = 575
Score = 27.9 bits (59), Expect = 9.1
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Frame = +3
Query: 69 LALNEEDVTKMLAATTHLGAE--NVNFQMETYVYKR---RADGTHVINLRRTWEKLVLAA 233
L + E+ +T+ A T + E ++ ++ET V + R++ H L E L +
Sbjct: 350 LRMFEQSLTEKELAVTRMRDECAKLSVELETLVENQINLRSEIAHYRKLMEQAENLRTSY 409
Query: 234 RAVVAIETP--LMCSSSHH-GPSVSV 302
++ I+TP LM +SSHH G S S+
Sbjct: 410 QSDFVIDTPSPLMRTSSHHYGSSYSL 435
>AF273797-2|AAG15146.1| 338|Caenorhabditis elegans nuclear receptor
NHR-52 protein.
Length = 338
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 448 Y*SFICQHSCDCFVQHRLPTRFVDIAIPCNTKSSH 552
Y SF+ + C QH+ PTRF DI CN + +
Sbjct: 274 YASFLFRF-CQLKNQHKAPTRFNDILSICNVNNKN 307
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,626,564
Number of Sequences: 27780
Number of extensions: 546406
Number of successful extensions: 1475
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -