Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30495
(814 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 124 9e-29
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 121 7e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 121 7e-28
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 33 0.17
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 33 0.23
At2g22340.1 68415.m02651 hypothetical protein 33 0.30
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 30 1.6
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 1.6
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 30 2.1
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 29 3.7
At1g69220.2 68414.m07926 serine/threonine protein kinase, putati... 29 3.7
At1g69220.1 68414.m07925 serine/threonine protein kinase, putati... 29 3.7
At1g66340.1 68414.m07534 ethylene receptor 1 (ETR1) identical to... 29 3.7
At4g19660.1 68417.m02888 ankyrin repeat family protein / BTB/POZ... 29 4.9
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 29 4.9
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 124 bits (298), Expect = 9e-29
Identities = 55/85 (64%), Positives = 67/85 (78%)
Frame = +2
Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433
+P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 74 NPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 133
Query: 434 DHQPITEASYVNIPVIALCNTDSPL 508
DHQPI E + NIP+IA C+TDSP+
Sbjct: 134 DHQPIKEGALGNIPIIAFCDTDSPM 158
Score = 83.0 bits (196), Expect = 2e-16
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = +3
Query: 69 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 248
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 249 IETP 260
IE P
Sbjct: 72 IENP 75
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +1
Query: 502 PTRFVDIAIPCNTKSSHSIGLMWWVV 579
P RFVDI IP N K HSIG ++W++
Sbjct: 157 PMRFVDIGIPANNKGKHSIGCLFWLL 182
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 121 bits (291), Expect = 7e-28
Identities = 54/85 (63%), Positives = 65/85 (76%)
Frame = +2
Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433
+P D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 75 NPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 134
Query: 434 DHQPITEASYVNIPVIALCNTDSPL 508
DHQPI E + NIP IA C+TDSP+
Sbjct: 135 DHQPIKEGALGNIPTIAFCDTDSPM 159
Score = 82.6 bits (195), Expect = 3e-16
Identities = 35/60 (58%), Positives = 46/60 (76%)
Frame = +3
Query: 81 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIETP 260
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIE P
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 502 PTRFVDIAIPCNTKSSHSIGLMWWVV 579
P FVDI IP N K HSIG ++W++
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLL 183
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 121 bits (291), Expect = 7e-28
Identities = 54/85 (63%), Positives = 65/85 (76%)
Frame = +2
Query: 254 DPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 433
+P D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 75 NPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 134
Query: 434 DHQPITEASYVNIPVIALCNTDSPL 508
DHQPI E + NIP IA C+TDSP+
Sbjct: 135 DHQPIKEGALGNIPTIAFCDTDSPM 159
Score = 82.6 bits (195), Expect = 3e-16
Identities = 35/60 (58%), Positives = 46/60 (76%)
Frame = +3
Query: 81 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIETP 260
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIE P
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 502 PTRFVDIAIPCNTKSSHSIGLMWWVV 579
P FVDI IP N K HSIG ++W++
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLL 183
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +2
Query: 401 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLDLWTLLSHATPS 544
P ++V D + I EAS + IPV+A+ + + PL+ + +++ P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178
>At3g54570.1 68416.m06038 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 417
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -2
Query: 630 ACSRGKHTTKAFNTSRANNPPHQTNRVGRLGVAWDSNVHKSSGESVL 490
+CSR K + +SR+ R GR+G WD+NVH+++ S+L
Sbjct: 86 SCSREKKQS----SSRSLKKGQSFKRSGRIGRCWDANVHRATCSSLL 128
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 119 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 238
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase
family protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 660 RTNSTHNIPSA-CSRGKHTTKAFNTSRAN 577
R+++ HN P+A S G HTTK+ N + N
Sbjct: 748 RSSNAHNAPAAGVSTGSHTTKSANNANVN 776
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +2
Query: 356 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA---SYVNIPVIALCNTDSPLDLWTLL 526
TP TNQ++ A E +LDP PI EA + + + L D P DL T++
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEALILAKIGLQCAELRRKDRP-DLGTVV 678
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 458 SYVNIPVIALCNTDSPLDLWTLLSHATPSLP 550
S+ +IP++A C + + LWT +S+ SLP
Sbjct: 371 SHPHIPLLASCGIEKSVKLWTPMSNDVLSLP 401
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/86 (25%), Positives = 43/86 (50%)
Frame = +3
Query: 39 SATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 218
S+++S +++LA ++ + ++A T L E ++ + ++ GT + + E
Sbjct: 647 SSSLSEAIELLATSDNRIGLLIAETQLLSEEVEKLKLTSGGHR----GTDDLVRKMLTEV 702
Query: 219 LVLAARAVVAIETPLMCSSSHHGPSV 296
L+ AR + + L CS S HG SV
Sbjct: 703 LIDNARLRKQVNSVLRCSLSGHGISV 728
>At1g69220.2 68414.m07926 serine/threonine protein kinase, putative
identical to serine/threonine kinase [Arabidopsis
thaliana] gi|2352084|gb|AAB68776
Length = 809
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 655 GSSNGEPWKEKSKRVEPTKPKGTRLVGYPA*NPEGS-GPRSHEDLGIETPWGP 810
G+S P EKS+++ T + V P+ + GP+S E+LGI P P
Sbjct: 482 GASAMSPKIEKSRQIRATMALQAQSVVAPSLEDTSTLGPKSSEELGITVPSKP 534
>At1g69220.1 68414.m07925 serine/threonine protein kinase, putative
identical to serine/threonine kinase [Arabidopsis
thaliana] gi|2352084|gb|AAB68776
Length = 836
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 655 GSSNGEPWKEKSKRVEPTKPKGTRLVGYPA*NPEGS-GPRSHEDLGIETPWGP 810
G+S P EKS+++ T + V P+ + GP+S E+LGI P P
Sbjct: 509 GASAMSPKIEKSRQIRATMALQAQSVVAPSLEDTSTLGPKSSEELGITVPSKP 561
>At1g66340.1 68414.m07534 ethylene receptor 1 (ETR1) identical to
GB:P49333 from [Arabidopsis thaliana] (Science 262
(5133), 539-544 (1993))
Length = 738
Score = 29.1 bits (62), Expect = 3.7
Identities = 29/95 (30%), Positives = 43/95 (45%)
Frame = +2
Query: 479 IALCNTDSPLDLWTLLSHATPSLPTLLV*CGGLLAREVLKAFVVCFPREQALGMLWVELV 658
I LC ++LWT +H S LV + +VL A V C AL ++ +
Sbjct: 62 IVLCGATHLINLWTFTTH---SRTVALV----MTTAKVLTAVVSC---ATALMLVHIIPD 111
Query: 659 LLTVNPGKKSQKGLNQQSPREQGLLGTQLKTQKVV 763
LL+V + K + RE GL+ TQ +T + V
Sbjct: 112 LLSVKTRELFLKNKAAELDREMGLIRTQEETGRHV 146
>At4g19660.1 68417.m02888 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 601
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 734 PTSLVPLGFVGSTLFDFSFQGSPLEEPIQPTTSPALVHGESTPRKPS 594
PT ++PL G+ DF+F G + T P H +++ ++PS
Sbjct: 329 PTIIIPLIQKGANASDFTFDGRSAVNICRRLTRPKDYHTKTSRKEPS 375
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +2
Query: 554 LLV*CGGLLAREVLKAFVVCFPREQALGMLWVELVLLTVNPGKKSQKGL 700
+LV G + REV FV+CFP Q+L W L L ++ KS + L
Sbjct: 95 VLVYDGVKVRREVSDWFVLCFPASQSLA--WFVLSFLVLHLKYKSSEKL 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,590,237
Number of Sequences: 28952
Number of extensions: 501646
Number of successful extensions: 1282
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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