Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30494
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    27   0.13 
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    27   0.13 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    27   0.13 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.2  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.8  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   8.5  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 192 SKGVQYLNEIKDSVVAGFQWALRKELW 272
           SK ++Y+N + D  VAGF+    K +W
Sbjct: 183 SKIIEYMNHLVDLGVAGFRVDAAKHMW 209


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 192 SKGVQYLNEIKDSVVAGFQWALRKELW 272
           SK ++Y+N + D  VAGF+    K +W
Sbjct: 184 SKIIEYMNHLVDLGVAGFRVDAAKHMW 210


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 192 SKGVQYLNEIKDSVVAGFQWALRKELW 272
           SK ++Y+N + D  VAGF+    K +W
Sbjct: 184 SKIIEYMNHLVDLGVAGFRVDAAKHMW 210


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 172  GPGTLGAKAPNLTGF 128
            GPG+ G+K+P + GF
Sbjct: 1119 GPGSTGSKSPPVAGF 1133


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 294 TPRKFSSAITPSLGPTGIQPQQSP*FH*GTEL 199
           TP K S +I+  L  T ++  +SP  H  TEL
Sbjct: 17  TPLKSSFSISSILPETALEAPKSPENHPETEL 48


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 589 NLRS-NTGGQAFPQCVFRPLAGPPWRTRANLRA 684
           N+ S NTGG  F     + +AG   R R  + A
Sbjct: 81  NINSINTGGLTFETAAHKIMAGATKRFRNQIEA 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,276
Number of Sequences: 336
Number of extensions: 4862
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)