Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30494
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 188 8e-49
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 188 8e-49
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 135 6e-33
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 47 3e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 30 0.43
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 28 1.8
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac... 27 3.1
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 27 4.0
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 27 4.0
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 4.0
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 188 bits (458), Expect = 8e-49
Identities = 103/224 (45%), Positives = 129/224 (57%), Gaps = 1/224 (0%)
Frame = +2
Query: 2 FMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHP 181
FM A+PM + L I+ G VNPRDDFK RAR + +++ +DVT+ARKIWCFGP+ TG
Sbjct: 587 FMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVV 646
Query: 182 GGLLQRSSVPQ*N*GLCCGWIPVGPKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQII 361
+ + KEG M EENLR RFNI DV LH DAIHRGGGQII
Sbjct: 647 VDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQII 706
Query: 362 PTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFKSPRWQVHLCS 541
PT RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF S +V
Sbjct: 707 PTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVF-SEEQRVGTPL 765
Query: 542 L*RPTYLSMSRSV-YCRICVPTPADRPSRSAYFDHWQVLPGEPV 670
YL ++ S + A + FDHW + G+P+
Sbjct: 766 YNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPL 809
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 156 PRVPGPNILVDCSKGVQYLNEIKDSVVAGFQWALRK 263
P G N++VD +K V YLNEIKDSVVA F WA ++
Sbjct: 638 PDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKE 673
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 663 NPCEPQSKPYNVVQETRKRE 722
+P +P SKP +V E RKR+
Sbjct: 807 DPLDPTSKPGQIVCEARKRK 826
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 188 bits (458), Expect = 8e-49
Identities = 103/224 (45%), Positives = 129/224 (57%), Gaps = 1/224 (0%)
Frame = +2
Query: 2 FMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHP 181
FM A+PM + L I+ G VNPRDDFK RAR + +++ +DVT+ARKIWCFGP+ TG
Sbjct: 587 FMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVV 646
Query: 182 GGLLQRSSVPQ*N*GLCCGWIPVGPKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQII 361
+ + KEG M EENLR RFNI DV LH DAIHRGGGQII
Sbjct: 647 VDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQII 706
Query: 362 PTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFKSPRWQVHLCS 541
PT RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF S +V
Sbjct: 707 PTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVF-SEEQRVGTPL 765
Query: 542 L*RPTYLSMSRSV-YCRICVPTPADRPSRSAYFDHWQVLPGEPV 670
YL ++ S + A + FDHW + G+P+
Sbjct: 766 YNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPL 809
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 156 PRVPGPNILVDCSKGVQYLNEIKDSVVAGFQWALRK 263
P G N++VD +K V YLNEIKDSVVA F WA ++
Sbjct: 638 PDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKE 673
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 663 NPCEPQSKPYNVVQETRKRE 722
+P +P SKP +V E RKR+
Sbjct: 807 DPLDPTSKPGQIVCEARKRK 826
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 135 bits (327), Expect = 6e-33
Identities = 81/232 (34%), Positives = 117/232 (50%), Gaps = 7/232 (3%)
Frame = +2
Query: 5 MKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHPG 184
M +P+ G+ DI+ G+VN K + + + Y++D+ +R IW FGP+ G
Sbjct: 700 MVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILR 759
Query: 185 GLLQRSSVPQ*N*GLCCGWIPVG----PKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGG 352
+ V + +I G +EG + +E +R V F + DV L + I+RGGG
Sbjct: 760 DDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGG 819
Query: 353 QIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFKS---PRW 523
QIIPT RR Y+ LTA PRLMEPVY+ E+ P ++ IY +L RRRGHV + P
Sbjct: 820 QIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGS 879
Query: 524 QVHLCSL*RPTYLSMSRSVYCRICVPTPADRPSRSAYFDHWQVLPGEPVRTS 679
++L P S R+ A FDHWQV+PG+P+ S
Sbjct: 880 PLYLVRALIPVIDSCGFETDLRVHTQGQA---MCQMVFDHWQVVPGDPLDKS 928
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/42 (50%), Positives = 25/42 (59%)
Frame = +1
Query: 511 ESQVAGTPMFIVKAYLPVNESFGLLPNLRSNTGGQAFPQCVF 636
E GTP FIVKA +PV ESFG + T G A+PQ +F
Sbjct: 895 EEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIF 936
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 350 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV 505
GQ+I + + L PRLM +Y C++Q +G +YGV+++RRG V
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRV 892
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.9 bits (64), Expect = 0.43
Identities = 20/86 (23%), Positives = 35/86 (40%)
Frame = +2
Query: 257 KEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLC 436
K+G + ++ RF + D H ++ T L A P ++EP+
Sbjct: 624 KKGFLIGHPIKNCRFVLEDGAYHPVDSSELAFRL--ATISAFRTAFLQANPMVLEPIMNV 681
Query: 437 EIQCPEVAVGGIYGVLNRRRGHVFKS 514
I P GG+ G L++R+ + S
Sbjct: 682 SITAPVEHQGGVIGNLDKRKATIVDS 707
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 696 RCRACSEVRTGSPGRTCQWSK 634
R +ACSE+R S C+W+K
Sbjct: 105 RHQACSEIRASSMSGECRWTK 125
>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 208
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 177 ILVDCSKGVQYLNEIKDSVVAGFQWALRKELW 272
IL G ++L +K + A + W+L K LW
Sbjct: 143 ILYPIGAGSEFLLVLKSRIAAQYVWSLNKLLW 174
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.6 bits (56), Expect = 4.0
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = +2
Query: 32 LPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGP-EGTGPQHPGGLLQRSSV 208
LPE IDEG+++ DD KT + + + K GP GLL S
Sbjct: 194 LPEKIDEGKLSDVDDGKTYICWRGDSQYVSINRLEK----GPRRAIRVYSREGLLDSISE 249
Query: 209 PQ*N*GLCCGWIPVG 253
PQ W P G
Sbjct: 250 PQDGQQSLLSWKPSG 264
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 424 RLHETGL-SS*QTCVQASSSCWNDLATTSMDGISMECYIIDVESNTTQI 281
++ ET L ++ Q + CW++L+TTS + + II + TT I
Sbjct: 191 QIQETSLGATTQEDESSDGICWDELSTTSPESSKVSEPIIQDNTQTTHI 239
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 160 LGAKAPNLTGFGNIVFVLFCKIPSAS 83
+G PNL GN +F L ++PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,486,223
Number of Sequences: 5004
Number of extensions: 76948
Number of successful extensions: 211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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