Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30494
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0103 + 1082077-1082167,1083037-1085477 205 3e-53
02_04_0017 + 18937774-18937864,18938505-18940945 203 1e-52
01_06_0662 + 30987187-30987277,30987825-30990214 197 9e-51
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 165 4e-41
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 138 4e-33
02_04_0148 - 20198407-20201424 60 2e-09
03_05_0511 + 25056018-25059107 55 7e-08
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 38 0.009
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 32 0.45
04_01_0330 - 4369326-4370852 30 2.4
03_05_1048 - 29950860-29951396,29951810-29952676 29 4.2
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 29 4.2
07_03_1162 + 24437396-24438652 28 7.4
07_03_0698 - 20765305-20768526 28 9.7
04_03_0451 - 16035346-16035361,16035463-16035617,16035784-160358... 28 9.7
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 205 bits (501), Expect = 3e-53
Identities = 105/234 (44%), Positives = 141/234 (60%), Gaps = 3/234 (1%)
Frame = +2
Query: 2 FMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHP 181
+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E++ +D A+KIWCFGPE TGP
Sbjct: 588 YMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMV 647
Query: 182 GGLLQRSSVPQ*N*GLCCGWIPVGPKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQII 361
+ + KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+I
Sbjct: 648 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVI 707
Query: 362 PTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFKS---PRWQVH 532
PT RR +YA LTA+PRL+EPVYL EIQ PE A+GGIYGVLN++RGHVF+ P ++
Sbjct: 708 PTARRVIYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLY 767
Query: 533 LCSL*RPTYLSMSRSVYCRICVPTPADRPSRSAYFDHWQVLPGEPVRTSEQALQ 694
P S S R + + FDHW ++ +P+ S QA Q
Sbjct: 768 NIKAYLPVIESFGFSSQLRAAT---SGQAFPQCVFDHWDMMTSDPLEVSSQANQ 818
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 203 bits (495), Expect = 1e-52
Identities = 103/232 (44%), Positives = 139/232 (59%), Gaps = 3/232 (1%)
Frame = +2
Query: 2 FMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHP 181
+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E++ +D A+KIWCFGPE TGP
Sbjct: 588 YMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMV 647
Query: 182 GGLLQRSSVPQ*N*GLCCGWIPVGPKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQII 361
+ + KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+I
Sbjct: 648 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVI 707
Query: 362 PTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFKS---PRWQVH 532
PT RR +YA LTA+PRL+EPVYL EIQ PE A+GGIYGVLN++RGHVF+ P ++
Sbjct: 708 PTARRVIYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLY 767
Query: 533 LCSL*RPTYLSMSRSVYCRICVPTPADRPSRSAYFDHWQVLPGEPVRTSEQA 688
P S S R + + FDHW ++ +P+ QA
Sbjct: 768 NIKAYLPVIESFGFSSQLRAAT---SGQAFPQCVFDHWDMMTSDPLEAGSQA 816
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 197 bits (480), Expect = 9e-51
Identities = 106/234 (45%), Positives = 143/234 (61%), Gaps = 4/234 (1%)
Frame = +2
Query: 2 FMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHP 181
+M+A+PM +GLPE IDEGR+ PRDD K R++ L+E++ +D A+KIWCFGPE TGP
Sbjct: 584 YMEARPMEEGLPEAIDEGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNIV 643
Query: 182 GGLLQRSSVPQ*N*GLCCGWIPVGPKEGVMAEENLRG--VRFNIYDVTLHTDAIHRGGGQ 355
+ + KEG +AEEN+RG + F + DV LH+DAIHRGGGQ
Sbjct: 644 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGRGICFEVCDVILHSDAIHRGGGQ 703
Query: 356 IIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFKS-PRWQVH 532
IIPT RR +YA LTA+PRL+EPVYL EIQ PE A+GGIY VLN++RGHVF+ R
Sbjct: 704 IIPTARRVIYAAQLTAKPRLLEPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTP 763
Query: 533 LCSL*RPTYLSMSRSV-YCRICVPTPADRPSRSAYFDHWQVLPGEPVRTSEQAL 691
L ++ YL + S + + + FDHW++L +P+ + L
Sbjct: 764 LYNI--KAYLPVIESFGFTSTLRAATSGQAFPLFVFDHWEMLSVDPLEPGTRQL 815
Score = 62.1 bits (144), Expect = 5e-10
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +3
Query: 156 PRVPGPNILVDCSKGVQYLNEIKDSVVAGFQWALRK 263
P GPNI+VD KGVQYLNEIKDSVVAGFQWA ++
Sbjct: 635 PETTGPNIVVDMCKGVQYLNEIKDSVVAGFQWASKE 670
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +1
Query: 505 FQESQVAGTPMFIVKAYLPVNESFGLLPNLRSNTGGQAFPQCVF 636
F+E Q GTP++ +KAYLPV ESFG LR+ T GQAFP VF
Sbjct: 754 FEEMQRPGTPLYNIKAYLPVIESFGFTSTLRAATSGQAFPLFVF 797
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 165 bits (401), Expect = 4e-41
Identities = 91/223 (40%), Positives = 130/223 (58%), Gaps = 3/223 (1%)
Frame = +2
Query: 44 IDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHPGGLLQRSS-VPQ*N 220
ID+ R+ P+DD K R + L+E++ +D A+KIW FGPE GP + + + +
Sbjct: 612 IDDERIGPKDDIKERGKILSEEFGWDKDLAKKIWAFGPETKGPNLLVDMCKGVQYLSEIK 671
Query: 221 *GLCCGWIPVGPKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLT 400
+ G+ KEG +AEEN+RGV F + DVTLH+D+IHRGGGQ+IPT RR +YA LT
Sbjct: 672 DSVVAGF-QWASKEGALAEENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYAAQLT 730
Query: 401 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGH-VFKSPRWQVHLCSL*RPTYLSMSRS 577
A PRLMEP+Y +IQ P+ AVG +YGVLN R G V +S R L +L YL +++S
Sbjct: 731 ASPRLMEPMYQVDIQVPKTAVGNVYGVLNSRNGELVEESERTGTPLSNL--RFYLPVAKS 788
Query: 578 V-YCRICVPTPADRPSRSAYFDHWQVLPGEPVRTSEQALQRCT 703
+ + + F HWQ + +P + +A + T
Sbjct: 789 FDFTEKLRAETSGQAFPQCIFHHWQTMRSDPFQEGSEAAKVIT 831
Score = 62.1 bits (144), Expect = 5e-10
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = +3
Query: 147 ALAPRVPGPNILVDCSKGVQYLNEIKDSVVAGFQWALRK 263
A P GPN+LVD KGVQYL+EIKDSVVAGFQWA ++
Sbjct: 646 AFGPETKGPNLLVDMCKGVQYLSEIKDSVVAGFQWASKE 684
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 138 bits (335), Expect = 4e-33
Identities = 84/230 (36%), Positives = 118/230 (51%), Gaps = 8/230 (3%)
Frame = +2
Query: 5 MKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQ--- 175
M A+P+ GL EDI+ G V+ K + ++Y++DV AR IW FGPE GP
Sbjct: 711 MVAEPLEKGLAEDIENGLVSLDSRQKEITDFFRQRYQWDVLAARSIWAFGPEKQGPNILL 770
Query: 176 --HPGGLLQRSSVPQ*N*GLCCGWIPVGPKEGVMAEENLRGVRFNIYDVTLHTDAIHRGG 349
+ ++ + + G+ G +EG + +E +R V+F I + + + +HRGG
Sbjct: 771 DDTLSVEVDKNLLNAVKDSIVQGF-QWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGG 829
Query: 350 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV---FKSPR 520
GQIIPT RR +Y+ L A PRLMEPVY EIQ P V IY VL+RRRGHV P
Sbjct: 830 GQIIPTARRVVYSAFLMANPRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPG 889
Query: 521 WQVHLCSL*RPTYLSMSRSVYCRICVPTPADRPSRSAYFDHWQVLPGEPV 670
+++ P S R A S FDHW ++PG+P+
Sbjct: 890 TPIYVVKAFLPVIESFGFETDLRYHTQGQAFCLS---VFDHWAIVPGDPL 936
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +3
Query: 147 ALAPRVPGPNILVDCSKGVQY----LNEIKDSVVAGFQWALRK 263
A P GPNIL+D + V+ LN +KDS+V GFQW R+
Sbjct: 758 AFGPEKQGPNILLDDTLSVEVDKNLLNAVKDSIVQGFQWGARE 800
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +2
Query: 350 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFKSPRWQV 529
GQII R A +L ++PRL+EP+Y CE+ P +G +Y VL R V K Q
Sbjct: 843 GQIITAVREACQAAILESKPRLVEPMYFCELTTPTEQLGSMYAVLGNCRARVLKE-EMQE 901
Query: 530 HLCSL*RPTYLSMSR-SVYCRICVPTPADRPSRSAYFDHWQVLPGEP 667
YLS++ S + + A S F HW+ +P +P
Sbjct: 902 GTSLFTVHAYLSVAESSEFSKKLRNATAGAASALLAFSHWETVPQDP 948
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 54.8 bits (126), Expect = 7e-08
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Frame = +2
Query: 311 DVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNR 490
D H++ + GQ+I + ++ +PRL+E +Y CE+ P +G Y VL+R
Sbjct: 854 DAANHSEQYNIFSGQVITAVKEACREAVVQNKPRLVEAMYFCELTTPTEQLGATYAVLSR 913
Query: 491 RRGHVFKSPRWQVHLCSL*RPTYLSMSRSV-YCRICVPTPADRPSRSAYFDHWQVLPGEP 667
+R V K Q YL ++ SV + A S HW+ +P +P
Sbjct: 914 KRARVLKE-EMQEGTSLFTVHAYLPVAESVGFSNELRSVTAGAASALLVLSHWEAIPEDP 972
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2
Query: 392 LLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV 505
L A PRL+EP+ E+ PE +G + G LN RRG V
Sbjct: 644 LRKAGPRLLEPIMKVEVITPEEHLGDVIGDLNSRRGQV 681
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 32.3 bits (70), Expect = 0.45
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 389 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRG 499
C A+P ++EPV E++ P G + G +N+R+G
Sbjct: 665 CYAAARPVILEPVMKVELKVPTEFQGTVTGDMNKRKG 701
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 366 VGMIWPPPLWMASVWSVTS 310
+G IWPPP+W S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>03_05_1048 - 29950860-29951396,29951810-29952676
Length = 467
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 377 CLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFKSP 517
C C+LTA PR+M +L E ++ VG V R + +SP
Sbjct: 77 CGRRCVLTANPRMMVEAFLKEYLGADIVVGTELVVWRGRATGLVRSP 123
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 398 TAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV 505
T +L EP + ++ PE +G + +L +RRG +
Sbjct: 497 TVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQM 532
>07_03_1162 + 24437396-24438652
Length = 418
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -3
Query: 702 VQRCRACSEVRTGSPG---RTCQWSKYALREGL 613
V+RCR C EV G G RTC+ A R L
Sbjct: 134 VRRCRFCPEVHVGGVGHEIRTCEGPGSAARNAL 166
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 284 LRGVRFNIYDVTLHTDAIHRG----GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 445
L G + ++ D+ L D +HRG ++ P +L P+L+E +++C I+
Sbjct: 870 LSGTKASLIDLFLQVDKLHRGLLSLSIRMDPPGNWDAIDAILLRPPKLLESLHICSIR 927
>04_03_0451 -
16035346-16035361,16035463-16035617,16035784-16035891,
16036277-16036336,16036444-16036519,16037189-16037220
Length = 148
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 551 PTYLSMSRSVYCRICV-PTPADRPSRSAYFDH 643
P YLS + C+ P P DRPS S DH
Sbjct: 108 PKYLSKEARDFISQCLRPYPDDRPSASKLLDH 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,192,215
Number of Sequences: 37544
Number of extensions: 579498
Number of successful extensions: 1597
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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