Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30494
(788 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 222 3e-58
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 2e-31
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 52 7e-07
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 39 0.005
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_6592| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2) 29 4.3
SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0) 28 9.9
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 222 bits (542), Expect = 3e-58
Identities = 117/223 (52%), Positives = 139/223 (62%), Gaps = 2/223 (0%)
Frame = +2
Query: 2 FMKAQPMPDGLPEDIDEG-RVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQH 178
FM A P+ + LPEDID+G +NPR DFK RARYL + Y +DV EARKIW FGPEGTGP
Sbjct: 577 FMTAGPLEEKLPEDIDDGCEINPRQDFKIRARYLADTYGWDVNEARKIWSFGPEGTGPNL 636
Query: 179 PGGLLQRSSVPQ*N*GLCCGWIPVGPKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQI 358
+ + KEG + +EN+RGVRFNI+DVTLH DAIHRGGGQI
Sbjct: 637 LVDVSKGVQYLNEIKDSVVAGFQWATKEGPLCDENVRGVRFNIHDVTLHADAIHRGGGQI 696
Query: 359 IPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFKSPRWQVHLC 538
IPT RR LYAC+LTA+P L+EPVY EIQCPE AVGGIYGVLNRRRG V +
Sbjct: 697 IPTARRVLYACMLTAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPM 756
Query: 539 SL*RPTYLSMSRSV-YCRICVPTPADRPSRSAYFDHWQVLPGE 664
+ + YL + S + + FDHWQVLPG+
Sbjct: 757 FIVK-AYLPVMESFGFTADLRSKTGGQAFPQCVFDHWQVLPGD 798
Score = 77.0 bits (181), Expect = 2e-14
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 508 QESQVAGTPMFIVKAYLPVNESFGLLPNLRSNTGGQAFPQCVF 636
+ES VAGTPMFIVKAYLPV ESFG +LRS TGGQAFPQCVF
Sbjct: 747 EESNVAGTPMFIVKAYLPVMESFGFTADLRSKTGGQAFPQCVF 789
Score = 64.1 bits (149), Expect = 1e-10
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = +3
Query: 147 ALAPRVPGPNILVDCSKGVQYLNEIKDSVVAGFQWALRK 263
+ P GPN+LVD SKGVQYLNEIKDSVVAGFQWA ++
Sbjct: 626 SFGPEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATKE 664
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 132 bits (320), Expect = 2e-31
Identities = 85/232 (36%), Positives = 113/232 (48%), Gaps = 7/232 (3%)
Frame = +2
Query: 5 MKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPQHPG 184
M A+P+ GL EDI+ +V + K + KY++D+ AR IW FGPE TGP
Sbjct: 555 MIAEPLEKGLAEDIENEKVLISWNKKKLGEFFQTKYDWDLLAARSIWAFGPENTGPNILV 614
Query: 185 GLLQRSSVPQ*N*GLCCGWIPVG----PKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGG 352
S V + I G +EG + +E +R V+F I D + + IHRGGG
Sbjct: 615 DDTLPSEVDKSLLNTVKDSIIQGFQWATREGPLCDEPIRNVKFKILDAVIAGEPIHRGGG 674
Query: 353 QIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFKS---PRW 523
QIIPT RR Y+ L A PRLMEP + E+Q P V +Y VL RRRGHV + P
Sbjct: 675 QIIPTARRVAYSAFLMATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGS 734
Query: 524 QVHLCSL*RPTYLSMSRSVYCRICVPTPADRPSRSAYFDHWQVLPGEPVRTS 679
++ P S R A S F HWQ++PG+P+ S
Sbjct: 735 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLS---VFHHWQIVPGDPLDKS 783
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/43 (44%), Positives = 31/43 (72%)
Frame = +1
Query: 508 QESQVAGTPMFIVKAYLPVNESFGLLPNLRSNTGGQAFPQCVF 636
Q++ V G+P++ +KA++P +SFG +LR++T GQAF VF
Sbjct: 727 QDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVF 769
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +3
Query: 147 ALAPRVPGPNILVDCSKGVQY----LNEIKDSVVAGFQWALRK 263
A P GPNILVD + + LN +KDS++ GFQWA R+
Sbjct: 602 AFGPENTGPNILVDDTLPSEVDKSLLNTVKDSIIQGFQWATRE 644
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 51.6 bits (118), Expect = 7e-07
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +2
Query: 401 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFKS---PRWQVHLCSL*RPTYLSMS 571
A PRLMEP + E+Q P V +Y VL RRRGHV + P ++ P S
Sbjct: 1 ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFG 60
Query: 572 RSVYCRICVPTPADRPSRSAYFDHWQVLPGEPVRTS 679
R A S F HWQ++PG+P+ S
Sbjct: 61 FETDLRTHTQGQAFCLS---VFHHWQIVPGDPLDKS 93
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/43 (44%), Positives = 31/43 (72%)
Frame = +1
Query: 508 QESQVAGTPMFIVKAYLPVNESFGLLPNLRSNTGGQAFPQCVF 636
Q++ V G+P++ +KA++P +SFG +LR++T GQAF VF
Sbjct: 37 QDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVF 79
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +1
Query: 511 ESQVAGTPMFIVKAYLPVNESFGLLPNLRSNTGGQAFPQCVF 636
E G+ +F V+A LPV ESFG +R T G A PQ +F
Sbjct: 444 EEMKEGSDVFDVEAVLPVAESFGFSEEIRKRTSGLANPQLMF 485
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 404 QP-RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV 505
QP RLM +Y C IQ +G +Y V+ RR G V
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRV 441
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 131 ARKIWCFGPEGTGP 172
A IW FGP GTGP
Sbjct: 179 ADHIWAFGPRGTGP 192
>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2021
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = -3
Query: 264 PSLGPTGIQPQQSP*FH*GTELLWSNPPGCWGPVPSGPKHQILRASVTSYS 112
PSL P G+ Q + T LL WGPVPSG H ILR + Y+
Sbjct: 1281 PSLAPVGLAAQNTS----STSLLIY-----WGPVPSGHVHGILRGYIVYYT 1322
>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 299 FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 433
FN V L + R +I+PT RR + LLT+ +PVY+
Sbjct: 526 FNKLGVFLGLAEVRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570
>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Frame = +2
Query: 527 VHLCSL*RPTYLSMSRSVYCRICVPT------PADRPSRSAYFDHWQVLPGEPVRTSEQA 688
+ +C + RPTY+ + CR+C P P D DHW L G+
Sbjct: 858 IGVCDV-RPTYMYKHCRLACRVCTPVKKHEGPPCDNKDPDEECDHWAKL-GKCASRPSYM 915
Query: 689 LQRC 700
+++C
Sbjct: 916 MEKC 919
>SB_6592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +3
Query: 123 LPKPVRFGALAPRVPGPNILVDCSKGVQYLNEIKDSVVAGFQWALRKELWLKRICVVLDS 302
+ KP+ +A + PN VD + ++NE + +++ Q R + L IC+VL
Sbjct: 897 MEKPLGKSDVAVKELNPN--VDEKDEIDFINEAEIMIISSHQIKSRNIIQLIGICIVLLL 954
Query: 303 TSMM*HSILMPSIEVVAKSFQQL-EDACTH 389
++ LM +A++ + L D C H
Sbjct: 955 QDLVQVPRLMEFCLQIAEAMEALHRDKCIH 984
>SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)
Length = 953
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 245 PVGPKEGVMAEENLRGVRFNIY-DVTLHTDAIHRGGGQIIPTTRR 376
PV PK + R V+ +Y ++L+T +HR G P+T +
Sbjct: 873 PVPPKPTEAQKRKARRVKLEMYLSMSLNTQGVHRRGSSNTPSTAK 917
>SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 20 MPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWC-FGPEGTGPQHPGGL 190
M G+P+ +G N DDF ++ + KYE T W EG PG L
Sbjct: 66 MNHGIPQSEVDGIFNLMDDFFNLSKDVKSKYEKKDTSQPNGWDELEREGNSADRPGDL 123
>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 402 AVSRHAYKHLLVVGMIWPPPLWMA 331
A+ +H HL + +WP WMA
Sbjct: 13 ALRKHQCSHLFTIKRVWPVTRWMA 36
>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 746
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 4/22 (18%)
Frame = +2
Query: 17 PMPDGLPEDIDEGR----VNPR 70
P+PDG+ E+IDEG+ +NPR
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPR 742
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,120,065
Number of Sequences: 59808
Number of extensions: 635192
Number of successful extensions: 1537
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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