Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30493
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.18
SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I... 31 0.23
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 29 0.54
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 29 0.94
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 28 1.2
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 28 1.6
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 28 1.6
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.8
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 27 3.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.8
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 26 5.0
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 26 6.6
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 8.8
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 25 8.8
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 25 8.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 8.8
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 25 8.8
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 275 PNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQP 409
P GA KP+ A V S AP + KPS + PP P
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Score = 28.7 bits (61), Expect = 0.94
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 275 PNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPP 385
P GA KP+ A S AP + KPS + PP
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +2
Query: 290 AQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAG 469
A KP+ A S AP + KPS + PP P A P+ + +P + +G
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV---PVPSGAPPVPKPSVAAPPVPAPSG 1157
Query: 470 A 472
A
Sbjct: 1158 A 1158
>SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and III
subunit Rpb6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 30.7 bits (66), Expect = 0.23
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +2
Query: 278 NRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLK--QIFENSPV 451
+ PG ST E +++ A + +AK + P TK E+ + QI N+PV
Sbjct: 38 SHPGEPSTTVITEDVASSKTAQSGKAVAKEDRTTTPYMTKYERARILGTRALQISMNAPV 97
Query: 452 LQGIAGAVKKIQTTVNNPVSQEILKWLKR 538
L + G +Q + ++I ++R
Sbjct: 98 LVDLEGETDPLQIAMKELAQKKIPLLVRR 126
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 29.5 bits (63), Expect = 0.54
Identities = 21/88 (23%), Positives = 32/88 (36%)
Frame = +2
Query: 272 QPNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENSPV 451
QP + ++ + S S+ I+ ++S P T T P P K I SPV
Sbjct: 636 QPQPKISTVSDTAVPSMSFANNISSRSVISAATDSKPSTRTSP--PFVNNTKPIVAKSPV 693
Query: 452 LQGIAGAVKKIQTTVNNPVSQEILKWLK 535
+ K +N S + W K
Sbjct: 694 TVTASSETNKKSQKINKKASPRVSLWTK 721
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 28.7 bits (61), Expect = 0.94
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 299 TEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQP 409
TE A STT V + P P E NPPTE++PE+P
Sbjct: 181 TENEASG-STTPVTQSGP----PRE-NPPTESQPEKP 211
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 290 AQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQP 409
A+ EK E ++ SA D AKP +NPP + + +P
Sbjct: 205 AEEQEKKEEFAPSSSTPSA--DSAKPETTNPPPQPQASEP 242
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +1
Query: 7 EWNSNQAWSVPNI--FGGVALQPLSQMF 84
+WN + WS P I FG + P S +F
Sbjct: 49 KWNREKGWSTPEIVPFGKLCFHPASSVF 76
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 51 RSSTAAPQSDVQGDATTTTQRPAPWQNLP 137
+S A+ + V + TT +P+PW++LP
Sbjct: 603 QSPAASKEIPVTSGSQTTAPKPSPWKSLP 631
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.8
Identities = 22/73 (30%), Positives = 29/73 (39%)
Frame = +2
Query: 275 PNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVL 454
P R Q PA TS SAA +K E+ ++P A K+I E P+
Sbjct: 187 PQRNDEQLGNSPASITSKPATTSAAQPSSKVEENMAKATSQPITTAE---KEIPELKPIE 243
Query: 455 QGIAGAVKKIQTT 493
K+I TT
Sbjct: 244 PEAIMISKEINTT 256
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 308 PAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENS 445
P +A + GVA + ++A+ ++ + T + + AG ++ IFE S
Sbjct: 365 PGKAANAGGVAVSGLEMAQNAQFSTWTHAEVDAKLAGIMQNIFEQS 410
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 266 LLQPNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAA 415
+ P P T P A+ T P + +PS NP T P+ P A
Sbjct: 923 IASPPPPKVGETYHPPTASGTR-----VPPVQQPSHPNPYTPVAPQSPVA 967
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 341 SAAPDIAKPSESNPPTETKP 400
SA+P +A SNPP E P
Sbjct: 522 SASPSVASTKTSNPPVEAPP 541
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +2
Query: 287 GAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQG-I 463
G STEK + +S+ A + +PSE T ++ P+K P L G I
Sbjct: 229 GGSSTEKVGQPSSSDDKAKGSTSKDQPSEEEEKTSDIQDRKIKTPIK------PSLLGKI 282
Query: 464 AGAVKKIQTTVNNPVSQEILKWLKRLN 544
+V K T V + V++ + ++N
Sbjct: 283 RSSVNKGMTDVASQVNRGMTDVASQVN 309
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 514 RDSEVVEETKSEQEKGGVILLPV 582
RD +E S KGG +LLPV
Sbjct: 207 RDEAFIESVMSSLLKGGTVLLPV 229
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 341 SAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENS 445
SA P+ +SN P+ T P + P I +NS
Sbjct: 415 SAVPENVSRFDSNEPSATSPILKRSSPTDSISQNS 449
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Frame = +3
Query: 645 VEKRKPARKSKGI------PPEGKKQGRRVKRGQE 731
+EK+ PARK+KG EGKK +R ++ +E
Sbjct: 64 LEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKE 98
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 269 LQPNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGP 421
+QP P + + E++ T S +P + S T+P +PA+ P
Sbjct: 204 IQPVIPEKKEKSEKKESSMTLRKRSVSPSSQNTARSPKRMATEPIEPASSP 254
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +2
Query: 263 NLLQPNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAA 415
N Q P +T +AT T + AP + S+P +KP P A
Sbjct: 1036 NTTQAAAPVTSTTTTIKQAT-TVSASKPAPSTVTSAASSPSNISKPSAPVA 1085
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 296 STEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGP 421
S KPA +T T AS+ +I+KPS P +P+A P
Sbjct: 1058 SASKPAPST-VTSAASSPSNISKPSA---PVANNVSKPSAVP 1095
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 311 AEATSTTGVASAAPDIAKPSESNPPTETKPEQ-PA-AGPLKQIFENSPVLQGIAGAVKKI 484
A + S TGV S++ PP E KPE PA A E++ V + I + K+
Sbjct: 299 APSASPTGVPVEEESHKATSDAVPPAEAKPEPVPASAAERAPTSESTTVPETIVASTTKV 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,384
Number of Sequences: 5004
Number of extensions: 66190
Number of successful extensions: 249
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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