Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30493
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             33   0.002
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   0.58 
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           23   3.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +2

Query: 209  AGAFWSLFWCT-KFSIYFLNLLQPNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPP 385
            AG+++ +   T ++ +   +L++P +   + ++   + TST   A+AA +I   +  N P
Sbjct: 1065 AGSYYGVPHSTLEYKVKERHLMRPRKRDQKQSDDKTKETSTVTAAAAATNIRPGTADNKP 1124

Query: 386  TETKPEQPAAGP 421
             + KP++P   P
Sbjct: 1125 -QLKPQKPFTSP 1135


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 62  CSPSVRCSRRRNHHNAETCAVAKSAV 139
           CSPSV C  R +  + E  A A S V
Sbjct: 16  CSPSVHCGTRPSFVSDEMIATAASVV 41


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 545 LSKRREASFCCQYTVTAGHRGNGWGIINNVS*RG*KAEAGKEIQGY 682
           + K+  AS C      AGH GN W           K E  K +QG+
Sbjct: 7   VDKQLLASRCVTKAAIAGHDGNLWAKSEGFEVS--KEELTKLVQGF 50


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 628  QRQLTGLKSGSRQGNPRVFHRKEKNRGGGLKGDRNYLLGK 747
            Q Q   + +    G P V     KN G G+    + +LGK
Sbjct: 1189 QAQTVRMVTAQLAGKPIVLASGNKNVGVGVSNSGSVVLGK 1228


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 281 RPGAQSTEKPAEATSTTGVASAAPDIAKPSE 373
           RP +Q+T   AE  S   ++ ++  +  P E
Sbjct: 886 RPASQATSVKAEPGSIMAMSESSKKVLSPGE 916


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 526 VVEETKSEQEKGGVILLPVH 585
           V+EE  +EQE+  + +LP H
Sbjct: 225 VIEEQSTEQERLLLSVLPEH 244



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 470 AVKKIQTTVNNPVSQEI 520
           A+K +Q T N+PV   +
Sbjct: 351 AIKYVQQTTNSPVDMRV 367


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 278 NRPGAQSTEKPAEATSTTGVASAA--PDIAKPSESNPPTETKPEQPAA 415
           N  GA +     +    TG+      PD   P E + P ET+P  P+A
Sbjct: 259 NGNGASNNNNNGDMFCHTGLGHYGHHPD---PGEVDLPPETQPTPPSA 303


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 154 KLLICDGRFCHGAGL 110
           K + C  +FCH AG+
Sbjct: 162 KSITCALQFCHNAGI 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,534
Number of Sequences: 438
Number of extensions: 4753
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)