Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30493
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 33 0.27
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 32 0.47
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 32 0.47
At1g15160.1 68414.m01812 MATE efflux family protein Strong simil... 30 1.4
At5g35794.1 68418.m04297 hypothetical protein contains Pfam prof... 30 1.9
At4g12610.1 68417.m01987 transcription initiation factor IIF alp... 30 1.9
At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibit... 30 1.9
At3g10250.2 68416.m01227 expressed protein 30 1.9
At3g10250.1 68416.m01226 expressed protein 30 1.9
At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein si... 29 2.5
At3g53190.1 68416.m05861 pectate lyase family protein similar to... 29 2.5
At1g15150.1 68414.m01811 MATE efflux family protein similar to r... 29 2.5
At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 29 3.3
At4g25620.1 68417.m03690 hydroxyproline-rich glycoprotein family... 29 3.3
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro... 29 3.3
At1g51120.1 68414.m05747 AP2 domain-containing transcription fac... 29 3.3
At5g17980.1 68418.m02109 C2 domain-containing protein contains I... 29 4.4
At4g28715.1 68417.m04107 myosin heavy chain, putative similar to... 29 4.4
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil... 29 4.4
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil... 29 4.4
At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A) co... 29 4.4
At3g29710.1 68416.m03745 hypothetical protein contains Pfam prof... 29 4.4
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 5.8
At5g38360.1 68418.m04630 esterase/lipase/thioesterase family pro... 28 5.8
At5g32775.1 68418.m03902 hypothetical protein 28 5.8
At5g62510.1 68418.m07845 F-box family protein contains Pfam prof... 28 7.7
At5g46010.1 68418.m05658 homeobox-leucine zipper transcription f... 28 7.7
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta... 28 7.7
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta... 28 7.7
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 28 7.7
At4g01810.1 68417.m00238 protein transport protein-related relat... 28 7.7
At3g24560.3 68416.m03086 expressed protein contains Pfam profil... 28 7.7
At3g24560.2 68416.m03084 expressed protein contains Pfam profil... 28 7.7
At3g24560.1 68416.m03085 expressed protein contains Pfam profil... 28 7.7
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 28 7.7
At3g04560.1 68416.m00484 expressed protein 28 7.7
At1g15170.1 68414.m01814 MATE efflux family protein similar to r... 28 7.7
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 275 PNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLKQI 433
P +P ++++ + SA +AKPSE N PTET Q G L Q+
Sbjct: 1528 PAKPSEENSQAKLSEVNPQAKPSAENSLAKPSEENSPTET--WQDVIGLLNQL 1578
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 278 NRPGAQSTEKPAEATSTTG--VASAAPDIAKPSESN-PPTETKPEQPAAGPLKQIFENSP 448
N P S+ PA T VAS P +A P + PP T P P A P Q+ +P
Sbjct: 69 NPPPPVSSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAP 128
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 278 NRPGAQSTEKPAEATSTTG--VASAAPDIAKPSESN-PPTETKPEQPAAGPLKQIFENSP 448
N P S+ PA T VAS P +A P + PP T P P A P Q+ +P
Sbjct: 69 NPPPPVSSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAP 128
>At1g15160.1 68414.m01812 MATE efflux family protein Strong
similarity to gi|4734005 F3L12.7 hypothetical protein
from Arabidopsis thaliana BAC gb|AC007178; similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 487
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 4 HEWNSNQAWSVPNIFGGVALQPLSQMFK 87
HE AW +P +F LQPL++ FK
Sbjct: 149 HEAGRFAAWLIPGLFAYAVLQPLTRYFK 176
>At5g35794.1 68418.m04297 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 662
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 302 EKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQP 409
+ PA+ T+T +AAP A P+ + P T E P
Sbjct: 40 QAPAQTTATAMATNAAPTTAAPTTTAPTTAPTTESP 75
>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
subunit (TFIIF-alpha) family protein low similarity to
SP|Q05913 Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha) (Transcription factor 5, large
chain) (TF5A) {Drosophila melanogaster}; contains Pfam
profile PF05793: Transcription initiation factor IIF,
alpha subunit (TFIIF-alpha)
Length = 543
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/75 (32%), Positives = 34/75 (45%)
Frame = +2
Query: 287 GAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIA 466
G + K EA V +A AKP+ S PP T P +P+ G K N + +
Sbjct: 374 GTVTNSKQKEAAKEEPVDNAP---AKPAPSGPPRGTPPAKPSKGKRKL---NDGDSKKPS 427
Query: 467 GAVKKIQTTVNNPVS 511
+V+K T N+P S
Sbjct: 428 SSVQKKVKTENDPKS 442
>At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibitor
family protein similar to extensin-like protein [Zea
mays] GI:5917666
Length = 264
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 281 RPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGP 421
+P A PAE + + VAS S NPP E PAA P
Sbjct: 44 KPIASPANSPAEIYTDSPVASPEAPADSFSPKNPPVEIDIYSPAASP 90
>At3g10250.2 68416.m01227 expressed protein
Length = 324
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 365 PSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVS 511
PS N T + + L N P++QG+ G + K +T NP S
Sbjct: 158 PSSINISTHARRVDASPNMLSSQTTNMPMMQGMNGGMIKSETAFTNPAS 206
>At3g10250.1 68416.m01226 expressed protein
Length = 324
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 365 PSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVS 511
PS N T + + L N P++QG+ G + K +T NP S
Sbjct: 158 PSSINISTHARRVDASPNMLSSQTTNMPMMQGMNGGMIKSETAFTNPAS 206
>At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein
similar to acetylornithine deacetylase
(Acetylornithinase, AO; N-acetylornithinase, NAO)
[Dictyostelium discoideum] SWISS-PROT:P54638
Length = 440
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 15 LEPSMECSKYFWRSSTAAPQSDVQGDATTTTQRPAPW 125
+E E F+R PQ +V G AT +T +P W
Sbjct: 239 MEGLKEIQARFYRDFPPHPQEEVYGFATPSTMKPTQW 275
>At3g53190.1 68416.m05861 pectate lyase family protein similar to
pectate lyase 2 GP:6606534 from [Musa acuminata]
Length = 483
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 675 WISLPASAFQPR*LTLLIIPHPFPR*PAVTVYWQQN 568
++ +P F TLL+IPHP P A V W+ N
Sbjct: 15 FLLVPQMVFSMLNRTLLLIPHPDPELVAYQVQWKVN 50
>At1g15150.1 68414.m01811 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 487
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 4 HEWNSNQAWSVPNIFGGVALQPLSQMFK 87
HE AW +P +F LQPL + FK
Sbjct: 149 HEAGRYAAWLIPGLFAYAVLQPLIRYFK 176
>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
Sex-lethal interactor [Drosophila melanogaster]
GI:6049274; contains Pfam profile PF04801: Sin-like
protein conserved region
Length = 689
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 302 EKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQP 409
+KP E T T A +KP PT KP QP
Sbjct: 7 DKPKEVTKTRRFAPGRAGKSKPKPKPEPTADKPVQP 42
>At4g25620.1 68417.m03690 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member At5g52430
[Arabidopsis thaliana];
Length = 449
Score = 29.1 bits (62), Expect = 3.3
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Frame = +2
Query: 86 RRRNHHNAETCAVAKSAVANKQLF*SPGTKQ*PTKPERSTVAGAFWSLFWC--TKFSIYF 259
R N+ + +T A SA+ + + P + Q G++WSL+WC +K +
Sbjct: 2 RSVNNSSVDTVNAAASAIVSAESRTQPSSVQ--------KKRGSWWSLYWCFGSKKNNKR 53
Query: 260 LN--LLQPNRPGAQSTEKPAEATSTTGVASAAPDIAKPSE------SNPPTETKPEQPAA 415
+ +L P + + P + +S+ + P IA PS S PP+ + P
Sbjct: 54 IGHAVLVPEPAASGAAVAPVQNSSSNSTSIFMPFIAPPSSPASFLPSGPPSASHTPDP-- 111
Query: 416 GPLKQIFENSP 448
G L + N P
Sbjct: 112 GLLCSLTVNEP 122
>At3g07540.1 68416.m00900 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 841
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +2
Query: 254 YFLNLLQPNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLKQI 433
+ +N+ + +R S EKP E +T SAA + P PP PE P P Q
Sbjct: 391 FCINISESSRSLKSSWEKP-ELDTTQQRESAAAAVTLPPPQRPP-PAMPEPPPLVPPSQS 448
Query: 434 F 436
F
Sbjct: 449 F 449
>At1g51120.1 68414.m05747 AP2 domain-containing transcription
factor, putative similar to DNA-binding protein RAV1
GI:3868857 from [Arabidopsis thaliana]
Length = 352
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 520 SEVVEETKSEQEKGGVILLPV 582
S+V EETKSE++KGG +L V
Sbjct: 329 SKVEEETKSEEKKGGFMLFGV 349
>At5g17980.1 68418.m02109 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1049
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 278 NRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLKQ 430
++P ++ + PAE T P P ES+P KP++ A+ PL++
Sbjct: 168 SKPPPETNDIPAEVKETV-----KPPQPPPEESSPAEGPKPDEEASPPLQE 213
>At4g28715.1 68417.m04107 myosin heavy chain, putative similar to
myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066
Length = 639
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Frame = +2
Query: 230 FWCTKFSIYFLNLLQPNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQP 409
+W + S + Q +PGA +K +TS G + + + S+ T E
Sbjct: 302 YWLSNTSTLLFMIQQSLKPGATPQQKTPVSTSLFGRMAMG---FRSAPSSAETSAAAEAA 358
Query: 410 AAGPLKQIFENSPVL---QGIAGAVKKIQTTVNNPVSQEI 520
AA ++ + P L Q + V+KI + + + E+
Sbjct: 359 AAAVIRPVVAKDPALLFKQQLTAYVEKIFGMIRDNLKNEL 398
>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +2
Query: 299 TEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVK 478
TE+PA+ T+G + K E+ + ++P K+ E +P + VK
Sbjct: 152 TEEPAKTEGTSGEKEEIVEETKKGETPETAVVEEKKPEVEEKKE--EATPAPAVVETPVK 209
Query: 479 KIQTTVNNPVSQ 514
+ +TT PV++
Sbjct: 210 EPETTTTAPVAE 221
>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +2
Query: 299 TEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVK 478
TE+PA+ T+G + K E+ + ++P K+ E +P + VK
Sbjct: 152 TEEPAKTEGTSGEKEEIVEETKKGETPETAVVEEKKPEVEEKKE--EATPAPAVVETPVK 209
Query: 479 KIQTTVNNPVSQ 514
+ +TT PV++
Sbjct: 210 EPETTTTAPVAE 221
>At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A)
contains Pfam domain, PF00096: Zinc finger, C2H2 type;
identical to cDNA putative histone deacetylase (HD2A)
GI:11066134
Length = 245
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 242 KFSIYFLNLLQPNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKP 400
K S+YF+ PN +E+ E +AA +AKP P E KP
Sbjct: 84 KGSVYFVGYKTPNIEPQGYSEEEEEEEEEVPAGNAAKAVAKPKAK--PAEVKP 134
>At3g29710.1 68416.m03745 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 669
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 302 EKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQP 409
+ P + T+T +AAP A P+ + P T E P
Sbjct: 71 QSPTQTTATAMATNAAPTTAAPTTTAPTTAPTTESP 106
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 275 PNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGP 421
P+ P A + P + S A+P P+ +NPP + P P P
Sbjct: 99 PSTP-ATTPPAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETP 146
>At5g38360.1 68418.m04630 esterase/lipase/thioesterase family
protein low similarity to SP|P49323 Non-heme
chloroperoxidase (EC 1.11.1.10) (Chloride peroxidase)
{Streptomyces lividans}; contains Interpro entry
IPR000379
Length = 242
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 523 EVVEETKSEQEKGGVILLPVHGHGGSPWKW 612
EV+E+ KS+ E+ L+ VHG + W W
Sbjct: 53 EVIEQRKSKSERENPPLVFVHGSYHAAWCW 82
>At5g32775.1 68418.m03902 hypothetical protein
Length = 240
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 294 SLLRNPLKRPVRPESRVPLQTLRNHLSQIRP 386
S++R PL +P SRV T R+H S RP
Sbjct: 95 SIIRPPLDLVTQPGSRVSSDTTRSHHSTPRP 125
>At5g62510.1 68418.m07845 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 420
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 666 RKSKGIPPEGKKQGRRVKRGQELFV 740
R SK I G+K+ RR +RG++ FV
Sbjct: 16 RSSKAIMRRGRKRRRRRQRGEDFFV 40
>At5g46010.1 68418.m05658 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana}; similar to HB2
homeodomain protein (GI:3955021) {Populus tremula x
Populus tremuloides}
Length = 122
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +2
Query: 359 AKPSESNPPTETKPEQPAAGPLKQIFEN---SPVLQGIAGAVKKIQTTVNNPVSQEILKW 529
+ P S+P E KP Q A L+++F +P L I K+Q+ ++ KW
Sbjct: 44 SSPVVSDPKPEWKPNQHQAQILEELFIGGTVNPSLTSIKQITIKLQSYGEEVDDADVYKW 103
Query: 530 LKRLNLSKR 556
S++
Sbjct: 104 FHNRKYSRK 112
>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 278 NRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTE-TKPEQP 409
N P AQ T PA+ T+ + P ++NPPT+ P++P
Sbjct: 167 NNPPAQKTNPPAQKTNPPAQKTNPP----AQKNNPPTQKNNPQKP 207
>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 278 NRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTE-TKPEQP 409
N P AQ T PA+ T+ + P ++NPPT+ P++P
Sbjct: 167 NNPPAQKTNPPAQKTNPPAQKTNPP----AQKNNPPTQKNNPQKP 207
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 275 PNRPGAQSTEKPAEATST-TGVASAAPD--IAKPSESNPPTETKPEQPAA 415
PN A STE ++ T+T V +A P+ P E+ T KP + AA
Sbjct: 1255 PNTETATSTENTSQTTTTPESVTTAPPEPITTAPPETVTTTAVKPTENAA 1304
>At4g01810.1 68417.m00238 protein transport protein-related related
to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
Length = 880
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 272 QPNRPGAQSTEKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLK 427
+P++ + S + P+ + G+ + +P + PP P +PAA P +
Sbjct: 53 RPDQMSSPSMKSPSLLSPANGIRTGSPIPRLSTPPGPPVFNTPVKPAAVPFR 104
>At3g24560.3 68416.m03086 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 456
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 465 AMPCRTGLFSKICFNGPAAGCSG 397
A+PCRT L + C+ PA G G
Sbjct: 185 AIPCRTSLTAAGCYLSPAPGSKG 207
>At3g24560.2 68416.m03084 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 660
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 465 AMPCRTGLFSKICFNGPAAGCSG 397
A+PCRT L + C+ PA G G
Sbjct: 389 AIPCRTSLTAAGCYLSPAPGSKG 411
>At3g24560.1 68416.m03085 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 462
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 465 AMPCRTGLFSKICFNGPAAGCSG 397
A+PCRT L + C+ PA G G
Sbjct: 191 AIPCRTSLTAAGCYLSPAPGSKG 213
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 275 PNRPGAQSTEKPAEATSTTGVASAAPDIA--KPSESNPPTETKPEQPAAGPLKQIFENSP 448
P +P + A+ ++S + D+ KP+ + P TK E+ P + + SP
Sbjct: 13 PEKPLENKVSEEAKLMEKEIISSDSADVVNDKPASDSNPVVTKEEEIDQTPAGEPEKESP 72
Query: 449 VLQGIAGAVKKIQ 487
+ GAV K +
Sbjct: 73 AVVEEVGAVVKAE 85
>At3g04560.1 68416.m00484 expressed protein
Length = 417
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +2
Query: 302 EKPAEATSTTGVASAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKK 481
E+ A S V +A +KPSES P +PE P L+ + + A++K
Sbjct: 52 EESAPNLSAPPVLKSALKRSKPSESTPEPVPEPEAPKK-RLQFKTSTDASEEQVIEAMQK 110
Query: 482 IQTTVNNP 505
I + + NP
Sbjct: 111 ITSHIKNP 118
>At1g15170.1 68414.m01814 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 481
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 4 HEWNSNQAWSVPNIFGGVALQPLSQMFK 87
HE W +P +F LQPL++ F+
Sbjct: 152 HEAGKYATWLIPGLFAYAVLQPLTRYFQ 179
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,123,434
Number of Sequences: 28952
Number of extensions: 376206
Number of successful extensions: 1415
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -