Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30491
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    29   0.75 
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        29   0.99 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   5.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   5.3  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   7.0  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    25   9.2  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -1

Query: 668  WKIPPFQMELEPIRRETHVVPRLNLWLWSSKPSISVKTAYGSLVWSVNVSNNFRMAPP 495
            W         +P+R  +  +P  ++  W+S  S+    A GS+   +  S  F + PP
Sbjct: 2135 WTSLKVSKHTDPLRATSDFIPLFSMQRWNSITSMFFAHASGSIALRITGSVLFALVPP 2192


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 131 LRNSHTITNNVSVTIENKSFTAIIKIDTNQNNI 229
           L++S T TN+  V  +  +FT  +  DTN  NI
Sbjct: 23  LQSSKTTTNSTLVASQEVNFTTYVYPDTNSTNI 55


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
 Frame = +2

Query: 20  AKTQSLLNDYHVPFYKRSKLIETCSFCNKEAFRENERLRNSHTITNNVSV---TIENKSF 190
           A    L N    P  KR    +  S  + E  +EN R+RN+ ++  N  V   T +N + 
Sbjct: 719 ATPSDLRNCDFEPVKKRKADWDHLSNHDNEVKKENNRIRNASSLMENPRVSTKTFDNFTL 778

Query: 191 ----TAIIKIDT----NQNNIKS 235
               T  +K DT     QNNIK+
Sbjct: 779 THDSTINVKADTVKRARQNNIKN 801


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 284  LMNSLIKI*KFYQKNPE-VEIETLRLVIKQMKKKLRNAK 397
            L + LI   K   +NP+ VE+E + + +++ K+KLR A+
Sbjct: 925  LQSKLIAANKDTTQNPDNVEVEAISIELERTKEKLRMAE 963


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 608 PRLNLWLWSSKPSISVKTAYGSLVWSVNVSNNFRMA 501
           PR+N++ WS   + S  ++Y  + +S+ V + F +A
Sbjct: 198 PRINVYRWSKTETFSDASSY--ITFSIPVPSEFSLA 231


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 5    DDLAIAKTQSLLNDYHVPFYKRSKLIETCSFCNKEAFRE 121
            D+  + +  SL+  Y +PF +R  L+  C F     F E
Sbjct: 1794 DESNLLRLMSLVEKYSLPFLRRVALVLYCMFDISLEFNE 1832


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -3

Query: 600 KSLAMVFKTFYFS*NGIRIPRL----VCECQQQLPHGTSNVTFTIRLFY 466
           K    VF T  FS +G  +  L    V   Q+ LPH    V + I +FY
Sbjct: 264 KGFCSVFTTAAFSFSGTEVIGLAAAEVDNPQKALPHAVKQVFWRIAIFY 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,000
Number of Sequences: 5004
Number of extensions: 50767
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)