Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30491
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959     29   3.1  
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059...    29   4.1  
02_01_0589 - 4355207-4355410,4355574-4355747,4356234-4356344,435...    29   4.1  
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289...    28   9.6  

>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
          Length = 849

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
 Frame = -1

Query: 677 IWDWKIPPFQMELEPIRRETHVVPRLN-LWLWSSKPS--ISVKTAYGSLVWSVN--VSNN 513
           IW  KIP F       R     VPRLN  WL  S       +  A  S++WS +  V+  
Sbjct: 107 IWFNKIPVFTTVWVANRERPITVPRLNSTWLKMSGDGNLYILDHATNSIIWSTDHVVNTT 166

Query: 512 FRMAPPTSLSLSDSSMTIPRGLSGL 438
                 TS +L +S   + R  SG+
Sbjct: 167 TETGMNTSATLLNSGNLVIRNPSGV 191


>08_02_1240 +
           25504789-25504794,25505421-25505555,25505854-25505964,
           25506091-25506183,25506264-25506884,25506970-25507143,
           25507239-25507464,25507560-25507651,25507744-25507842,
           25507936-25507984,25508071-25508124,25508312-25508484,
           25508561-25508632,25508713-25508808,25509032-25509048,
           25509704-25509875,25509973-25510071,25510381-25510484,
           25510940-25511126,25511212-25511220
          Length = 862

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 238 HTFNCRQTDISDIHNTNELLNKDIEILSKEPRSGDRNLKV 357
           H  +  Q  +++I +TNELL      LSK  RS D N+KV
Sbjct: 47  HDMDVSQPHVNEI-STNELLKTLKRKLSKSKRSEDDNIKV 85


>02_01_0589 -
           4355207-4355410,4355574-4355747,4356234-4356344,
           4356506-4356712,4357609-4357716,4358442-4358698,
           4359120-4359241,4359782-4360001,4360877-4361130,
           4361782-4362015,4362143-4362189
          Length = 645

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -1

Query: 608 PRLNLWLWSSKPSISVKTAYGSLVWSVNVS-NNFRMAPPTSLSLSDSSMTIPRGLSGLFW 432
           P L+ W W+S  S      YG++VW V         AP  S  L    +   RGL+  FW
Sbjct: 4   PPLSSWPWASLGSWVQYVLYGAVVWKVAEEWRQQGAAPVGSWWLHLLLLFAARGLTYQFW 63


>08_02_0747 -
           20728073-20728081,20728167-20728353,20728810-20728913,
           20729008-20729139,20729583-20729810,20730263-20730358,
           20730440-20730511,20730588-20730760,20730947-20731000,
           20731086-20731134,20731228-20731326,20731420-20731511,
           20731607-20731832,20731927-20732100,20732186-20732809,
           20732890-20733033,20733108-20733218,20733516-20733650,
           20733963-20733989
          Length = 911

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 238 HTFNCRQTDISDIHNTNELLNKDIEILSKEPRSGDRNLKV 357
           H  +  Q  +++I +TNELL      LSK  RS D N+K+
Sbjct: 54  HDMDVSQPHVNEI-STNELLKTLKRKLSKSKRSEDDNIKM 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,221
Number of Sequences: 37544
Number of extensions: 283003
Number of successful extensions: 751
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)