Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30491
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_44613| Best HMM Match : Glyco_hydro_53 (HMM E-Value=0.79)           31   1.0  
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_3655| Best HMM Match : BTB (HMM E-Value=0.035)                      28   9.8  

>SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 62  YKRSKLIETC--SFCNKEAFRENERLRNSHTITNNVSVTIENKSFTAIIKIDTNQNNIKS 235
           Y +SK  +    +F N    R N+ L N++   NN   TI     T  IKI+ N+   + 
Sbjct: 269 YSKSKQFDQVLTTFENSSRNRVNDTLTNNNNTRNNTERTITPAKNTGTIKINANKTKDQQ 328

Query: 236 NIHSTVDKL 262
           +  +  +KL
Sbjct: 329 HTSTRRNKL 337


>SB_44613| Best HMM Match : Glyco_hydro_53 (HMM E-Value=0.79)
          Length = 696

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 62  YKRSKLIETC--SFCNKEAFRENERLRNSHTITNNVSVTIENKSFTAIIKIDTNQNNIKS 235
           Y +SK  +    +F N    R N+ L N++   NN   TI     T  IKI+ N+   + 
Sbjct: 269 YSKSKQFDQVLTTFENSSRNRVNDTLTNNNNTRNNTERTITPAKNTGTIKINANKTKDQQ 328

Query: 236 NIHSTVDKL 262
           +  +  +KL
Sbjct: 329 HTSTRRNKL 337


>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +2

Query: 56  PFYKRSKLIETCSFCNKEAFRENERLRNSHTITNNVSVTIENKSFTAIIKIDTNQNNIKS 235
           P Y +++L ETC   +     +NER  +++  T+   +T E +   A+   ++N NN   
Sbjct: 59  PLYLKTRLGETCQTLSVMVSHDNERFVDNNDFTSRKMLTAE-EMINAV--FESNLNNRPE 115

Query: 236 N 238
           N
Sbjct: 116 N 116


>SB_3655| Best HMM Match : BTB (HMM E-Value=0.035)
          Length = 369

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
 Frame = +2

Query: 95  FCNKEAFRENE-------RLRNSHTITNNVSVTIENKSFTAIIKIDTNQ 220
           FC  +AFRE E       R +N H +  +++   E KSF  +  +  +Q
Sbjct: 6   FCRSKAFREKEKCAREILRAKNEHELIGDLARLFEEKSFCDVTFVVNDQ 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,931,511
Number of Sequences: 59808
Number of extensions: 347201
Number of successful extensions: 1095
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)