Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30491
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    27   0.20 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.2  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   7.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   7.4  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 125 ERLRNSHTITNNVSVTIENKSFTAIIKIDTNQNNIKSNIHS 247
           E +RN+H + NN +  I+N +     + D NQ N K N ++
Sbjct: 407 ELIRNTHCVNNNQNDNIQNTN----NQNDNNQKNNKKNANN 443


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -2

Query: 505 WHLQRHFHYQTLL*LYLEAFLVCFGLFLYSILIIPMF----CVSQFLFHLF 365
           +HL +     T L + + AF+VC+  F    L+ P       +  FL  LF
Sbjct: 362 FHLAKERKASTTLGIIMSAFIVCWLPFFVLALVRPFLKNPDAIPAFLSSLF 412


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 535 QTRDPYAVLTEIEGFEDHSQRFRRGTTWVSR 627
           Q +D   +    + FED  ++FRR  + +SR
Sbjct: 432 QDQDYQPIYFVADSFEDAKEKFRRWVSTMSR 462


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 116 RENERLRNSHTITNNVSVTIENKSFTAIIKIDTNQNNIKSNIHSTVDK 259
           +EN  +   H+I   + + I +    A +  D N   ++S +H T D+
Sbjct: 2   KENFSIMFIHSIFLILIIFIYSNETIAQVTDDENCETLQSEVHITKDE 49


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 116 RENERLRNSHTITNNVSVTIENKSFTAIIKIDTNQNNIKSNIHSTVDK 259
           +EN  +   H+I   + + I +    A +  D N   ++S +H T D+
Sbjct: 2   KENFSIMFIHSIFLILIIFIYSNETIAQVTDDENCETLQSEVHITKDE 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,341
Number of Sequences: 438
Number of extensions: 3074
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)