Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30491
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29410.1 68416.m03695 terpene synthase/cyclase family protein...    31   0.86 
At1g53180.1 68414.m06027 expressed protein                             31   1.1  
At4g23750.2 68417.m03417 AP2 domain-containing transcription fac...    28   8.0  
At4g23750.1 68417.m03416 AP2 domain-containing transcription fac...    28   8.0  

>At3g29410.1 68416.m03695 terpene synthase/cyclase family protein
           similar to terpene synthase GB:CAA72074 from
           [Arabidopsis thaliana], contains Pfam profile: PF01397
           terpene synthase family
          Length = 603

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 454 LGIVIEESDSESDVGGAMRKLLLTFTDQTRDPYAVLTEIEGFEDHSQRF 600
           LG++ E   S + +  A   L++T  D T D YA L E++   D   R+
Sbjct: 330 LGVLFEPRYSLARIFLAKLTLIMTVVDDTCDAYATLPEVQSLHDAFHRW 378


>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 581 SKPSISVKTAYGSLVWSVNVSNNFRMAPPTSLSLSDSSMTIPRGLS 444
           S+    ++ A  S  +   VSNN R  PP SL L D++M    G S
Sbjct: 245 SRMGFLIREALASSHYVPKVSNNQRQRPPRSLRLEDTAMVKQGGSS 290


>At4g23750.2 68417.m03417 AP2 domain-containing transcription
           factor, putative DNA-binding protein Pti6 - Lycopersicon
           esculentum,PID:g2213785
          Length = 343

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 571 LFQLKRHTDPSFGL*MSATTSAWHLQRHF 485
           LF     TD +FG    +  S+WH++ HF
Sbjct: 300 LFTADMCTDMNFGFDFGSGLSSWHMEDHF 328


>At4g23750.1 68417.m03416 AP2 domain-containing transcription
           factor, putative DNA-binding protein Pti6 - Lycopersicon
           esculentum,PID:g2213785
          Length = 343

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 571 LFQLKRHTDPSFGL*MSATTSAWHLQRHF 485
           LF     TD +FG    +  S+WH++ HF
Sbjct: 300 LFTADMCTDMNFGFDFGSGLSSWHMEDHF 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,650,197
Number of Sequences: 28952
Number of extensions: 253913
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)