Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30490
         (847 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   7.0  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   7.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   7.0  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 634 GGKILTY*PWVLRSLINQFIRSPW 563
           G  I  Y P VL+++ +Q+I  PW
Sbjct: 439 GDYIRKYLP-VLKNMPSQYIHEPW 461


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
 Frame = +1

Query: 631 HHNGITWSVTIPWGRIGHPQADP---MVLHRSRPGFAVPW 741
           HH    +S ++ W   GH +A     + +H   P     W
Sbjct: 75  HHCRFKFSSSVGWSPAGHEEAQSPHRIYMHPESPSKGSHW 114


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 774 NSWFYPGGW 800
           +SWFY  GW
Sbjct: 290 SSWFYNSGW 298


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,338
Number of Sequences: 336
Number of extensions: 5461
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)