Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30490
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    28   1.9  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   7.7  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   7.7  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   7.7  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   7.7  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 189 VKITNRMKIPTKAV*RDAFSDACNFAFHCFTRFPFSKMNTLFFITSANK 43
           ++I     IP K     +FSD   F +      P++K++ L F+ + +K
Sbjct: 268 LRILTEFNIPNKLDNSASFSDLLKFVYKTSKPSPYAKISLLHFLLTESK 316


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 300 NIITDLNYNPSVSFIDL*TYW 238
           N++TD N N +VS +D   YW
Sbjct: 27  NLLTDWNLNTNVSALDPSDYW 47


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 690 LWVPNPPPGDGYRPGNSIVV 631
           LW  +PPP   +RP  +I +
Sbjct: 322 LWTQDPPPMQSFRPNYNIAI 341


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -1

Query: 322 IYCSVQ*KYNYRLKL*SFSVFHRFVDIL 239
           +Y S++ +Y   + + +F+++HRF+  L
Sbjct: 12  LYSSLRTRYKVYISMHAFAIWHRFISFL 39


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 5   LCVICGRNIEKQSL--FAEVIKKRVFILEN-GNL-VKQWNAKLHASENASR 145
           LC ICG+NI  Q    ++++ +  + +  N G+L V    A    SEN  R
Sbjct: 108 LCAICGKNITSQDYMGYSDMARANISMTHNTGDLTVSLEEASRLESENVKR 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,616,306
Number of Sequences: 5004
Number of extensions: 77988
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)