Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30490
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0058 - 803826-803830,804471-804689,804817-804888,805056-80...    30   2.7  
03_06_0299 + 32956737-32957129,32957250-32957442,32957537-32958117     29   6.2  
11_06_0356 - 22654329-22654571,22654695-22654898,22655065-226553...    28   8.1  
04_03_0781 + 19572795-19573540,19573906-19573956,19574179-195742...    28   8.1  
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986...    28   8.1  
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794...    28   8.1  

>10_01_0058 -
           803826-803830,804471-804689,804817-804888,805056-805245
          Length = 161

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 716 DRCNTMGSACGCPILPQGMVTDQV 645
           D CNT   AC CP +P G + + V
Sbjct: 59  DDCNTCCMACWCPCIPVGQIAEIV 82


>03_06_0299 + 32956737-32957129,32957250-32957442,32957537-32958117
          Length = 388

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 55  SYKKKGIHFRKWKPSETMECK 117
           S KKKG+HF  W+  E M  K
Sbjct: 262 SLKKKGLHFPPWRKPEYMRAK 282


>11_06_0356 -
           22654329-22654571,22654695-22654898,22655065-22655319,
           22655435-22655626,22655738-22656046,22656149-22656355,
           22656450-22656527,22657493-22657747,22657850-22658000,
           22658269-22658500,22658631-22658886,22658960-22659091
          Length = 837

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 771 GPRSQPVTLGPWNRKARPGP 712
           GP  Q +T+GPW     P P
Sbjct: 416 GPNGQSITIGPWGGNPGPSP 435


>04_03_0781 +
           19572795-19573540,19573906-19573956,19574179-19574251,
           19574772-19574876
          Length = 324

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = +1

Query: 685 PQADPMVLHRSRPGFAVPW--PQGYRLGPGASIPGFTQEDGPTLLLR---PW 825
           P   P   H       +P   P G  L PG ++PG  Q   PT +LR   PW
Sbjct: 132 PTPTPTPRHHHHDVLVLPGMPPPGSFLRPGPAMPGIPQASIPTHMLRAAPPW 183


>04_03_0184 +
           12395349-12395542,12396821-12397467,12398119-12398655,
           12399087-12399239,12399315-12399809,12400032-12400555
          Length = 849

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 301 KYNYRLKL*SFSVFHRFVDILGTENETGIPN 209
           +YNY   L SFS+F   ++I G E +T I N
Sbjct: 106 EYNYSWNLSSFSIFDASLNITGCEFDTYIIN 136


>01_01_1003 -
           7939376-7939414,7939464-7939568,7939757-7939872,
           7941494-7942760
          Length = 508

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 604 PMVSRLIFYHHNGITWSVTIPWGRI-GHPQADPMVLHRSRPGFAVPWPQG 750
           P+    +F HH G  W V + WG I   P AD  VL     GF +P+P G
Sbjct: 235 PLAPICVFSHH-GRLWWVDLTWGVITSDPFADEPVL-----GF-IPFPAG 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,018,355
Number of Sequences: 37544
Number of extensions: 561754
Number of successful extensions: 1307
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)