Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30490
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_43974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)          29   4.7  
SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42)           29   4.7  
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 28   8.3  
SB_26825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = -1

Query: 781 QELRPQVP------TGNPGAMEPQSQAWTGVIPW 698
           Q++RPQVP      TG P A+   S AW+G + W
Sbjct: 66  QQVRPQVPMQSVPDTGVPPAISKNSLAWSGTLEW 99


>SB_43974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 547 KHYYY*FSCLLFAEIAFITTITLQ*RVKFPIH 452
           KHYY   +C   A+IAFI+T       KF IH
Sbjct: 629 KHYYVFTNCRNSADIAFISTRKQSYDAKFRIH 660


>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
          Length = 245

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 835 PGYPKAVKGGWGHPPG*NQELRPQVPTGNPGAMEPQSQAWTG 710
           P Y   ++ G  +PPG       Q   G PGA  PQ Q + G
Sbjct: 132 PSYDSTMQQGGSYPPGQQPYPGQQAYPGQPGA-SPQGQPYPG 172


>SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42)
          Length = 436

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 96  RFP-FSKMNTLFFITSANKDCFSIFRPHITHKQ 1
           +FP  S + T+F  T+A+  C S F+P  T K+
Sbjct: 57  KFPVLSSLTTMFTSTTASTSCTSAFKPFKTEKE 89


>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 1640

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -1

Query: 766  QVPTGNPGAMEPQSQAWTGVIPWGPPVGAQSSPRGWLPTR*FHCGGKILTY*PW 605
            + P  N  A +P + A  G  P  PP+ A S PR  L  + F   G  L   PW
Sbjct: 1439 RTPAVNQRATDPHAAADGGTPPARPPLAADSRPRSALRRQRFALPG--LGCYPW 1490


>SB_26825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +1

Query: 640 GITWSVTIPWGRIGHPQADPMVLHRSRPGFAVPWPQGYRLG 762
           G  WS    W  +G PQ+ PM  H S       W   Y +G
Sbjct: 19  GADWS---SWQYVGQPQSGPMATHASIVNDEKGWWAAYAIG 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,276,173
Number of Sequences: 59808
Number of extensions: 641203
Number of successful extensions: 1580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)