Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30490
(847 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr... 29 5.5
U41545-7|AAK39136.1| 687|Caenorhabditis elegans Hypothetical pr... 29 5.5
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 29 5.5
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 29 5.5
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 28 9.6
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 28 9.6
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 28 9.6
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 28 9.6
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 820 AVKGGWGHPPG*NQELRPQVPTGNPGAMEPQSQAWTGVIPWGPPVGAQSSPRG 662
A++GG G PG N +P+ P+G +M P Q G P Q +P G
Sbjct: 1932 AMRGGGGFAPGQNNS-QPRAPSGQFASMNPSMQQQYPQQQQGWPQQRQQNPGG 1983
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 820 AVKGGWGHPPG*NQELRPQVPTGNPGAMEPQSQAWTGVIPWGPPVGAQSSPRG 662
A++GG G PG N +P+ P+G +M P Q G P Q +P G
Sbjct: 1921 AMRGGGGFAPGQNNS-QPRAPSGQFASMNPSMQQQYPQQQQGWPQQRQQNPGG 1972
>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
protein K10G4.5 protein.
Length = 1251
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Frame = -3
Query: 431 LFNLIIVYIMITSNDTP-------GDECGVRVIITSIYLEDV 327
L N I+ T NDTP D CG+RV+ T++ +E++
Sbjct: 341 LNNTIVKTTSTTGNDTPPEIPDDINDGCGLRVLATAVIIENI 382
>U41545-7|AAK39136.1| 687|Caenorhabditis elegans Hypothetical
protein C02F12.8 protein.
Length = 687
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -1
Query: 820 AVKGGWGHPPG*NQELRPQVPTGNPGAMEPQSQAWTGVIPWGPPVGAQSSPRG 662
A G+ HP NQ + P VP G+ PQ + P PVGA +G
Sbjct: 155 ASNSGFAHPQIVNQPMHPHVPVGSQNYNPPQ---FVPAPPTMMPVGAVMVSQG 204
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -2
Query: 771 GPRSQPVTLGPWNRKARPGPV*YHGVRLWVPNPPPGDGYRPGN 643
G +P +GP K PGP G P PPGD PG+
Sbjct: 256 GAPGKPGPIGPPGPKGNPGP---DGQSYQGPPGPPGDSGTPGH 295
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -2
Query: 771 GPRSQPVTLGPWNRKARPGPV*YHGVRLWVPNPPPGDGYRPGN 643
G +P +GP K PGP G P PPGD PG+
Sbjct: 256 GAPGKPGPIGPPGPKGNPGP---DGQSYQGPPGPPGDSGTPGH 295
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 796 PPG*NQELRPQVPTGNPGAMEPQSQAWTGVI-PWGPP 689
PPG + P+ P G+PG M S+ G P GPP
Sbjct: 245 PPGNPGGIGPRGPPGDPGIMTQDSRGVEGPSGPSGPP 281
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = -1
Query: 835 PGYPKAVKGGWGHPPG*NQELRPQVPTGNPGAMEPQSQAW-TGVIPWGPPVGAQSSP 668
P P + G G P G N P P G PG PQ A G P G + P
Sbjct: 151 PKGPSGLPGSAG-PAGGNGRRGPPGPVGGPGEQGPQGDAGRPGAAGRPGPAGPRGEP 206
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = -1
Query: 835 PGYPKAVKGGWGHPPG*NQELRPQVPTGNPGAMEPQSQAW-TGVIPWGPPVGAQSSP 668
P P + G G P G N P P G PG PQ A G P G + P
Sbjct: 145 PKGPSGLPGSAG-PAGGNGRRGPPGPVGGPGEQGPQGDAGRPGAAGRPGPAGPRGEP 200
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/56 (39%), Positives = 27/56 (48%)
Frame = -1
Query: 835 PGYPKAVKGGWGHPPG*NQELRPQVPTGNPGAMEPQSQAWTGVIPWGPPVGAQSSP 668
PG P+ G G PPG + + P G PGA+ P A G P GPP G +P
Sbjct: 172 PG-PQGPSGPPG-PPGQPGQPGQRGPPGEPGALLPGGDAPPG--PSGPP-GRPGAP 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,263,998
Number of Sequences: 27780
Number of extensions: 486304
Number of successful extensions: 1188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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