Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30490
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24500.2 68417.m03513 hydroxyproline-rich glycoprotein family...    30   1.7  
At4g24500.1 68417.m03512 hydroxyproline-rich glycoprotein family...    30   1.7  
At5g04170.1 68418.m00405 calcium-binding EF hand family protein ...    29   3.9  
At3g29030.1 68416.m03627 expansin, putative (EXP5) identical to ...    28   6.8  
At4g14620.1 68417.m02250 expressed protein contains Pfam profile...    28   9.0  
At3g42950.1 68416.m04511 glycoside hydrolase family 28 protein /...    28   9.0  
At3g17350.1 68416.m02217 expressed protein                             28   9.0  

>At4g24500.2 68417.m03513 hydroxyproline-rich glycoprotein family
           protein
          Length = 290

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 738 WNRKARPGPV*YHGVRLWVPNPPP 667
           WN   RP PV + G   WVP P P
Sbjct: 115 WNNNFRPPPVNHSGPPQWVPRPFP 138


>At4g24500.1 68417.m03512 hydroxyproline-rich glycoprotein family
           protein
          Length = 319

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 738 WNRKARPGPV*YHGVRLWVPNPPP 667
           WN   RP PV + G   WVP P P
Sbjct: 144 WNNNFRPPPVNHSGPPQWVPRPFP 167


>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
           similarity to peflin [Homo sapiens] GI:6015440; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 354

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 838 LPGYPKAVKG-GWGHPPG*NQELRPQVPTGNPGAMEPQSQAWTGVIPWGPPVGAQSSPR 665
           + GYP   +G G+G+  G NQ   PQ P  + G   P   + T   P+  P GA S P+
Sbjct: 1   MSGYPPTSQGYGYGYGGG-NQPPPPQPPYSSGGNNPPYGSSTTSS-PYAVPYGA-SKPQ 56


>At3g29030.1 68416.m03627 expansin, putative (EXP5) identical to
           expansin At-EXP5 GB:AAB38071 from [Arabidopsis
           thaliana]; alpha-expansin gene family, PMID:11641069
          Length = 255

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -3

Query: 767 PGPNR*PW--GHGTAKPGLDRCNTMGSACG 684
           PG +  PW   H T   G D   TMG ACG
Sbjct: 31  PGGHMGPWINAHATFYGGGDASGTMGGACG 60


>At4g14620.1 68417.m02250 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 341

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 55  SYKKKGIHFRKWKPSETMECK 117
           S KKKG+HF  W+ ++ M  K
Sbjct: 239 SLKKKGMHFPPWRKADYMRAK 259


>At3g42950.1 68416.m04511 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase precursor [Cucumis melo]
           GI:3320460; contains PF00295: Glycosyl hydrolases family
           28
          Length = 484

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
 Frame = -1

Query: 847 WVFLPGYPKAVKGGWGHPPG*N-----QELRPQVPTGNPGAMEPQSQAW 716
           W  LP  P    G   H P        Q LR  V TGN G++  Q Q W
Sbjct: 140 WSLLPPLPSYGYGREHHGPRYGSFIHGQNLRDVVVTGNNGSINGQGQTW 188


>At3g17350.1 68416.m02217 expressed protein 
          Length = 278

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -3

Query: 842 FFTRLPQGRKRRVGPSSWVKPGIEAPGPNR*PWGHGTAKPGLDRCNTMGSACG 684
           + T +  G+ R VGP  W   GIE          +   + G DRC   G  CG
Sbjct: 202 YTTVIDNGKMRGVGPLDW-SYGIEL--------SYSVTEIGCDRCRKSGGTCG 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,079,729
Number of Sequences: 28952
Number of extensions: 434074
Number of successful extensions: 891
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)