Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30488
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 31 0.073
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 29 0.17
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 0.68
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 27 0.68
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 0.90
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 27 0.90
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 2.1
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 2.7
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 25 3.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 3.6
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 25 3.6
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 4.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 4.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 4.8
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 25 4.8
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 4.8
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 24 6.3
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 24 6.3
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 24 6.3
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 24 6.3
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 24 6.3
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 24 8.3
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 24 8.3
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 24 8.3
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 24 8.3
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 30.7 bits (66), Expect = 0.073
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 178 KPRDSEVVEETKSEQEKGGVILLPVQVTAVTVEMVGII 291
K RD +E S KGG +LLPV + +E+ I+
Sbjct: 205 KKRDEAFIESVMSSLLKGGTVLLPVDAASRVLELCCIL 242
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 29.5 bits (63), Expect = 0.17
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 46 NPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVVEETKSEQ 222
N P+ +KP A GPL ++S +A A + +T N P ++ E T Q
Sbjct: 318 NSPSVSKPPSSATGPLYHSPQSSLTNSSVASADVQERTHNTNGASPIQDQISEFTDQHQ 376
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 27.5 bits (58), Expect = 0.68
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = +1
Query: 25 IAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDS 192
I+ ++S P T T P P K I SPV + K +N PR S
Sbjct: 664 ISAATDSKPSTRTSP--PFVNNTKPIVAKSPVTVTASSETNKKSQKINKKASPRVS 717
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 27.5 bits (58), Expect = 0.68
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 34 PSESNPPTETKPEQP 78
P NPPTE++PE+P
Sbjct: 197 PPRENPPTESQPEKP 211
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 27.1 bits (57), Expect = 0.90
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 293 VIIPTISTVTAVTCTGNKM-TPPFSCSDLVSSTTSESLGFTGLLTVVWI 150
V+IPT TVT +G+++ T F + S T + G TV I
Sbjct: 227 VVIPTAGTVTETAVSGSELYTSTFPANGTTSGTVEVVIPTAGTRTVTKI 275
Score = 26.6 bits (56), Expect = 1.2
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 293 VIIPTISTVTAVTCTGNKM-TPPFSCSDLVSSTTSESLGFTGLLTVVWI 150
V+IPT TVT +G+++ T F + S T + G TV I
Sbjct: 367 VVIPTAGTVTETEISGSELYTSTFPANGTTSGTVEVVIPTAGTRTVTKI 415
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 27.1 bits (57), Expect = 0.90
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 290 IIPTISTVTAVTCTGNKMTPPFSCSDLVSSTTSES 186
+ T+ T+T CTGN T S L+ + TS S
Sbjct: 69 VYTTLITITNSQCTGNYSTLTISSQPLIHTNTSIS 103
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 1.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 10 SAAPDIAKPSESNPPTETKP 69
SA+P +A SNPP E P
Sbjct: 522 SASPSVASTKTSNPPVEAPP 541
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 2.1
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +1
Query: 52 PTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVVEETKSEQEKG 231
P+ T PA K I P + AGA +++ N+P+ P + + S+ +
Sbjct: 643 PSPTSLLDPARAVRKVIDGIDPPKEAGAGATADVESAANSPITPPRTWHSPDFTSKSFEP 702
Query: 232 GVILLPVQVTAVTVEMV 282
LP +++ VT + +
Sbjct: 703 IERKLPSRISEVTEDSI 719
Score = 24.6 bits (51), Expect = 4.8
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +1
Query: 10 SAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRD 189
S AP + KPS + PP P A P+ + +P + +GA + +V P P
Sbjct: 1118 SGAPPVPKPSVAAPPV---PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Query: 190 S 192
S
Sbjct: 1175 S 1175
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 2.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 10 SAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENS 114
SA P+ +SN P+ T P + P I +NS
Sbjct: 415 SAVPENVSRFDSNEPSATSPILKRSSPTDSISQNS 449
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 3.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 189 ISWLHWIIDCCLDFFNC 139
I WL W+I CC+ F C
Sbjct: 237 IIWLLWLIICCI-LFGC 252
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 3.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 19 PDIAKPSESNPPTETKPEQPAA 84
P + +PS NP T P+ P A
Sbjct: 946 PPVQQPSHPNPYTPVAPQSPVA 967
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 3.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 189 ISWLHWIIDCCLDFFNC 139
I WL W+I CC+ F C
Sbjct: 204 IIWLLWLIICCI-LFGC 219
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 1 GVASAAPDIAKPSESNPPTETKPEQPAAGPLKQI 102
G+ S A DI ++PP E P Q G L+ +
Sbjct: 412 GILSFASDILNQYAASPPNEKNPRQ-KEGALRMV 444
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 4.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 287 IPTISTVTAVTCTGNKMTPPFSCSDLVSSTTSESLGFTGLLTVVWIFLTA 138
+ T ST ++ + T + + S + SS S S+G GL+ I L A
Sbjct: 988 VKTASTSSSTSYTSSSSSSS-STTSAASSKASVSMGLNGLMIAAVILLVA 1036
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 24.6 bits (51), Expect = 4.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 235 VILLPVQVTAVTVEMVGIITTSVTG 309
++ +P T TV G +TT++TG
Sbjct: 196 IVTVPTTTTTTTVGYPGSVTTTLTG 220
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -2
Query: 231 SLLLLRFSLFNHFRISW-LHWI 169
S+LLLR SL + ISW +H+I
Sbjct: 177 SILLLRVSLLQLYLISWTIHFI 198
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -3
Query: 290 IIPTISTVTAVTCTGNKMTPPFSCSDLVSSTTSESLGFT 174
I+ +I++ ++V + + +S S + +TTS S+GFT
Sbjct: 593 IVSSINSSSSVFISSVSSSLQYSSSYVTETTTSGSVGFT 631
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 24.2 bits (50), Expect = 6.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 184 RDSEVVEETKSEQEKGGVILLPVQVTAVTVEMVGIITTSVTG 309
+DS V +E +QE+ + + +++ T I TTS G
Sbjct: 5 KDSSVKDENPGKQEESSIAVESREMSTATNNSKNIETTSSNG 46
>SPBC1347.06c |cki1||serine/threonine protein kinase
Cki1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 24.2 bits (50), Expect = 6.3
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 3/22 (13%)
Frame = +1
Query: 10 SAAPDIAKPSES---NPPTETK 66
++A D A+P+++ NPPTETK
Sbjct: 360 NSASDSAEPNQNSLPNPPTETK 381
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 24.2 bits (50), Expect = 6.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 7 ASAAPDIAKPSESNPPTETKPEQP 78
++ + D AKP +NPP + + +P
Sbjct: 219 STPSADSAKPETTNPPPQPQASEP 242
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 6.3
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 189 ISWLHWIIDCCLDF-FNCSCDALQNWAVL 106
I W+ W+I CC+ F + S D + N A++
Sbjct: 166 IIWILWLIICCILFVYIKSGDLILNKALI 194
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 24.2 bits (50), Expect = 6.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 213 FSLFNHFRISWLH 175
F +FNHF WLH
Sbjct: 130 FYIFNHFLHKWLH 142
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 23.8 bits (49), Expect = 8.3
Identities = 13/66 (19%), Positives = 33/66 (50%)
Frame = +1
Query: 31 KPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVVEET 210
+P+E+ P +K + P ++ + +PV +A A ++ VN + + VE +
Sbjct: 378 RPNENTPADWSKSYIDYSDPNAEVAKPAPV---VAPAAPTVEAEVNGVEDSKKRKSVESS 434
Query: 211 KSEQEK 228
+ ++++
Sbjct: 435 EKDEDE 440
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 23.8 bits (49), Expect = 8.3
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 209 VSSTTSESLGFTGLLTVVWIFLTAPA-MPCRTGLFSKICFNGPAAG 75
V++T S+G+TG ++W +L A + C +++C P +G
Sbjct: 79 VATTLPYSIGYTGTPGLLWGWLIAMVFIICIALSMAELCSAMPTSG 124
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = -2
Query: 315 LSTRH*RCYYPHHFHRDRRD-----LYWQQNDASLL 223
L T + + YYP ++H DR D ++W + L+
Sbjct: 232 LDTWNPKRYYPSYWHSDRADFTHGTMFWMASKEGLI 267
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 23.8 bits (49), Expect = 8.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 313 KRKPKKSRYPQKKNRK 360
KRK KKS++ KK++K
Sbjct: 69 KRKEKKSKHEHKKHKK 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.129 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,345,198
Number of Sequences: 5004
Number of extensions: 25472
Number of successful extensions: 119
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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