Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30488
(364 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0) 35 0.023
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 31 0.37
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84) 31 0.37
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 27 4.6
SB_9006| Best HMM Match : WSC (HMM E-Value=0.85) 27 4.6
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 27 4.6
SB_34508| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_32053| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027) 27 4.6
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 27 4.6
SB_56294| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013) 27 6.0
SB_47662| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_59028| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-05) 26 8.0
SB_58769| Best HMM Match : XPA_C (HMM E-Value=0.01) 26 8.0
SB_32131| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_29995| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-05) 26 8.0
SB_10847| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_10584| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_6777| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_50665| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_41328| Best HMM Match : NLPC_P60 (HMM E-Value=5.8) 26 8.0
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32) 26 8.0
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 26 8.0
SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_19834| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) 26 8.0
SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7) 26 8.0
SB_5598| Best HMM Match : C1_1 (HMM E-Value=0.87) 26 8.0
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 26 8.0
>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
Length = 816
Score = 34.7 bits (76), Expect = 0.023
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 22 DIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQT-TVNNPVKPRDSEV 198
DI KP+ PPT+T+ ++++F N P+++ AG + + T + N + ++
Sbjct: 587 DIVKPATLAPPTKTRKRLKKRSKVEELFAN-PMVELFAGPLVECFTENLTNKIAEDSAQK 645
Query: 199 VEETKSEQE 225
EE +SE++
Sbjct: 646 EEEEESEEK 654
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 30.7 bits (66), Expect = 0.37
Identities = 22/101 (21%), Positives = 36/101 (35%)
Frame = +1
Query: 31 KPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVVEET 210
+PS P++ P P+ G + + + IA ++ V + KP E
Sbjct: 1515 EPSPGGSPSDLSPTDPSPG--ESPHPEADLSTEIAPPLEAAPNAVEDEAKPESERSGEPA 1572
Query: 211 KSEQEKGGVILLPVQVTAVTVEMVGIITTSVTG*KRKPKKS 333
+ K V V TAV + S T + P K+
Sbjct: 1573 DEHKLKEAVAAAAVTATAVATTGAAVAAASATTKGKSPSKT 1613
>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
Length = 944
Score = 30.7 bits (66), Expect = 0.37
Identities = 22/101 (21%), Positives = 36/101 (35%)
Frame = +1
Query: 31 KPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVVEET 210
+PS P++ P P+ G + + + IA ++ V + KP E
Sbjct: 410 EPSPGGSPSDLSPTDPSPG--ESPHPEADLSTEIAPPLEAAPNAVEDEAKPESERSGEPA 467
Query: 211 KSEQEKGGVILLPVQVTAVTVEMVGIITTSVTG*KRKPKKS 333
+ K V V TAV + S T + P K+
Sbjct: 468 DEHKLKEAVAAAAVTATAVATTGAAVAAASATTKGKSPSKT 508
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/76 (23%), Positives = 31/76 (40%)
Frame = -3
Query: 242 KMTPPFSCSDLVSSTTSESLGFTGLLTVVWIFLTAPAMPCRTGLFSKICFNGPAAGCSGF 63
+M P + +++ + L F L+T + P +PC TG++S + C
Sbjct: 66 EMLPVVDAQEAINALMEQRLKFVPLVTSHQMVPRVPPVPCPTGMYSLGAASMNCTACPAG 125
Query: 62 VSVGGFDSDGFAMSGA 15
S + A SGA
Sbjct: 126 FSCSDPAAPPAACSGA 141
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.5 bits (58), Expect = 3.4
Identities = 20/77 (25%), Positives = 29/77 (37%)
Frame = +1
Query: 1 GVASAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVK 180
G AS PS ++ P K++ +S + + K QTT PV
Sbjct: 4211 GTASTKSAQVHPSTTHNGLPVSTAAPTTNGRKEVSSSSS--RHVLDETKTFQTTKAAPVS 4268
Query: 181 PRDSEVVEETKSEQEKG 231
D + E+ K EKG
Sbjct: 4269 TGDPKPPEQNKGIDEKG 4285
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 7 ASAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENSPV 120
AS++ + + P S PPT TK P+ G Q +PV
Sbjct: 1008 ASSSSNHSTPVNSAPPTPTKNATPSKGTPGQSTSGTPV 1045
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +1
Query: 49 PPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVVEETKSEQE 225
PPT+TK P K++ N + +K++ ++ ++ + E V K E+E
Sbjct: 492 PPTQTKKGNRLMSPTKELLTNKQQNKANPAVIKELSRPPSS-IRAKQGERVVSPKEEKE 549
>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
Length = 924
Score = 27.1 bits (57), Expect = 4.6
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Frame = +1
Query: 10 SAAPDIAKPSESNPPTE----TKPEQPAAGPLKQIFENSPVL----QGIAGAVKKIQTTV 165
S P AKP PPT T P QP+ + + SP L + + ++
Sbjct: 283 SPQPTEAKPHTPPPPTSTPPTTAPRQPSPMAPAPVQKESPPLTDDRKDEEQGIDHLEKAA 342
Query: 166 NNPVKPRDSEVVEETKSEQEK 228
N V D E +E KSEQE+
Sbjct: 343 ENLVLLLDDE--DEEKSEQER 361
>SB_9006| Best HMM Match : WSC (HMM E-Value=0.85)
Length = 441
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 207 LFNHFRISWLHWIIDCCLDFFNCS 136
+FN RI WLHW D L F CS
Sbjct: 136 VFNGKRIDWLHW--DTYLPEFICS 157
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/69 (24%), Positives = 27/69 (39%)
Frame = +1
Query: 43 SNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVVEETKSEQ 222
S PP+E QP P+K+ +SP+L K + +PR + S+
Sbjct: 197 SAPPSEKNAFQP---PMKKTKPSSPLLTRARANAAKAPRKSHRQSRPRTASTCSNASSKS 253
Query: 223 EKGGVILLP 249
E + P
Sbjct: 254 EGDNCVFQP 262
>SB_34508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 34 PSESNPPTETKPE--QPAAGPLKQIFENSPVLQ 126
P + P ETKPE Q A KQ+ + SP++Q
Sbjct: 148 PVKPEPKPETKPEAKQEAKPEAKQVTKPSPIVQ 180
>SB_32053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 7 ASAAPD-IAKPSESNPPTETKPEQPAAG 87
A+A+P +AKP ++PP+ KP P G
Sbjct: 299 AAASPKPVAKPIPASPPSTGKPSPPPLG 326
>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
Length = 2261
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/65 (23%), Positives = 26/65 (40%)
Frame = +1
Query: 31 KPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVVEET 210
+P E PP T P +P G + + P+ + A + K V + V +
Sbjct: 1252 EPEEEKPPEPTGPPEPEPGSEEWEYVAQPIDKEFADVLSKQWEIVEDTYVATCKHVFRDI 1311
Query: 211 KSEQE 225
+ E+E
Sbjct: 1312 RHEKE 1316
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 27.1 bits (57), Expect = 4.6
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Frame = +1
Query: 31 KPSESNPPTETKPEQPAAGPLKQ---IFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVV 201
K + P TK P +K + +PV + + +I TV +PVK
Sbjct: 1626 KYEDQKPLLSTKTSDPTVSIVKNRETSYFCTPVGTIVISSCSQITNTVVSPVKKDSDMCT 1685
Query: 202 EETKSEQEKGGVILLPVQVTAVTVEMVGIITTSVTG*KRKPKK 330
++ +++Q+K L VQ + V + TG + PK+
Sbjct: 1686 QDAETQQKK----LEDVQQKSKEVTCAAVSVEGSTGARSVPKQ 1724
>SB_56294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 26.6 bits (56), Expect = 6.0
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 ASAAPDIAKPSESNPPTETKPEQPAAGPL-KQIFENSPVLQGIAGAVKKIQTTVNNPVKP 183
A AAPD+ E P T ++PA L Q SP Q I + +++ ++ P +P
Sbjct: 128 APAAPDVTADREPAAPDVTADQKPAMQDLPTQAPRGSPEYQSITRSQQELAASMLLP-QP 186
Query: 184 R 186
R
Sbjct: 187 R 187
>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
Length = 340
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 31 KPSESNPPTETKPEQPAAGP 90
KP++S PTE+KP P + P
Sbjct: 205 KPTKSTKPTESKPTAPTSLP 224
>SB_47662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 290 IIPTISTVTAVTCTGNKMTPPFSCSDLVSSTTSESLGFTG 171
++P+ + GN P C DLV+S S S+ TG
Sbjct: 486 VVPSYPVTSYTGYYGNFPMPRVLCDDLVASPASSSVSPTG 525
>SB_59028| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-05)
Length = 362
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1
Query: 328 KSRYPQKKNRKR 363
+S+YP+KKNRKR
Sbjct: 344 RSKYPEKKNRKR 355
>SB_58769| Best HMM Match : XPA_C (HMM E-Value=0.01)
Length = 123
Score = 26.2 bits (55), Expect = 8.0
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 40 ESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVVEETKSE 219
E N T+ P + P+K IF+ S V ++ + K + +V ETK+E
Sbjct: 38 ELNHETKDNPINKSYPPMK-IFKLSEVKSKAVEVWGSLEKLEDEKTKRKQKKVNVETKNE 96
Query: 220 QEK 228
+EK
Sbjct: 97 EEK 99
>SB_32131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 25 IAKPSESNPPTETKPEQPA 81
I P ESNPP + PE P+
Sbjct: 67 IQDPIESNPPVDQPPEPPS 85
>SB_29995| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-05)
Length = 362
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1
Query: 328 KSRYPQKKNRKR 363
+S+YP+KKNRKR
Sbjct: 344 RSKYPEKKNRKR 355
>SB_10847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1
Query: 328 KSRYPQKKNRKR 363
+S+YP+KKNRKR
Sbjct: 115 RSKYPEKKNRKR 126
>SB_10584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1
Query: 328 KSRYPQKKNRKR 363
+S+YP+KKNRKR
Sbjct: 113 RSKYPEKKNRKR 124
>SB_6777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 25 IAKPSESNPPTETKPEQPA 81
I P ESNPP + PE P+
Sbjct: 144 IQDPIESNPPVDQPPEPPS 162
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 25 IAKPSESNPPTETKPEQPA 81
I P ESNPP + PE P+
Sbjct: 2172 IQDPIESNPPVDQPPEPPS 2190
>SB_50665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1
Query: 328 KSRYPQKKNRKR 363
+S+YP+KKNRKR
Sbjct: 607 RSKYPEKKNRKR 618
>SB_41328| Best HMM Match : NLPC_P60 (HMM E-Value=5.8)
Length = 155
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 25 IAKPSESNPPTETKPEQPA 81
I P ESNPP + PE P+
Sbjct: 116 IQDPIESNPPVDQPPEPPS 134
>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
Length = 808
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = +1
Query: 151 IQTTVNNPVKPRDSEVVEETKSEQEKGGVILLPVQVTAVTVEMVGIITTSVT 306
+ T + NP P SE S K + L PV+ T + +I T
Sbjct: 411 VDTEIENPKAPNVSEPATVNGSSSGKANITLWPVKQTNGPISFYQVIVADRT 462
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 25 IAKPSESNPPTETKPEQPA 81
I P ESNPP + PE P+
Sbjct: 173 IQDPIESNPPVDQPPEPPS 191
>SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1
Query: 328 KSRYPQKKNRKR 363
+S+YP+KKNRKR
Sbjct: 739 RSKYPEKKNRKR 750
>SB_19834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 19 PDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNP 174
P I P+ + P ETK +P+ P + N P + A + + T P
Sbjct: 33 PSIPDPTIAMVPLETKTRKPSRDPTQPRLGNKPPVPDPAIPMVPLATKTRKP 84
>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
Length = 562
Score = 26.2 bits (55), Expect = 8.0
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +1
Query: 19 PDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEV 198
P+ AKP E ++KPE+ A E P K +T V KP SEV
Sbjct: 504 PEEAKPEEPKEDEKSKPEETKAEE-----EAKPEAPKAEEEAKPGETKVEEEAKPDSSEV 558
>SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 412
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 25 IAKPSESNPPTETKPEQPA 81
I P ESNPP + PE P+
Sbjct: 373 IQDPIESNPPVDQPPEPPS 391
>SB_5598| Best HMM Match : C1_1 (HMM E-Value=0.87)
Length = 296
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1
Query: 328 KSRYPQKKNRKR 363
+S+YP+KKNRKR
Sbjct: 278 RSKYPEKKNRKR 289
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 25 IAKPSESNPPTETKPEQPA 81
I P ESNPP + PE P+
Sbjct: 696 IQDPIESNPPVDQPPEPPS 714
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.310 0.129 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,374,958
Number of Sequences: 59808
Number of extensions: 188051
Number of successful extensions: 708
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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